Detailed information NTG0742996

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDX84_RS05225
• Genome accession: NZ_CP122801
• Coordinates: 1079255..1080247 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ETEC1734
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1074255..1085247

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDX84_RS05195 (QDX84_05195)	ispD	1074316..1075026 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDX84_RS05200 (QDX84_05200)	ispF	1075026..1075505 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDX84_RS05205 (QDX84_05205)	truD	1075502..1076551 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QDX84_RS05210 (QDX84_05210)	surE	1076532..1077293 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDX84_RS05215 (QDX84_05215)	pcm	1077287..1077913 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDX84_RS05220 (QDX84_05220)	nlpD	1078098..1079192 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QDX84_RS05225 (QDX84_05225)	rpoS	1079255..1080247 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QDX84_RS05230 (QDX84_05230)	ygbN	1080341..1081705 (-)	1365	WP_000104441.1	GntP family transporter	-
QDX84_RS05235 (QDX84_05235)	ygbM	1081794..1082570 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QDX84_RS05240 (QDX84_05240)	ygbL	1082575..1083213 (-)	639	WP_001278994.1	aldolase	-
QDX84_RS05245 (QDX84_05245)	otnK	1083210..1084472 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=742996 QDX84_RS05225 WP_000081550.1 1079255..1080247(+) (rpoS) [Escherichia coli strain ETEC1734]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=742996 QDX84_RS05225 WP_000081550.1 1079255..1080247(+) (rpoS) [Escherichia coli strain ETEC1734]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715