Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QDY55_RS27135 Genome accession   NZ_CP122768
Coordinates   5450082..5451911 (-) Length   609 a.a.
NCBI ID   WP_024177878.1    Uniprot ID   -
Organism   Escherichia coli strain ETEC1738     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5445082..5456911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY55_RS27110 (QDY55_27105) bioP 5445798..5446697 (-) 900 WP_001196244.1 biotin transporter -
  QDY55_RS27115 (QDY55_27110) yigL 5446773..5447573 (-) 801 WP_000285355.1 sugar/pyridoxal phosphate phosphatase YigL -
  QDY55_RS27120 (QDY55_27115) pldB 5447581..5448603 (-) 1023 WP_000487664.1 lysophospholipase L2 -
  QDY55_RS27125 (QDY55_27120) rhtB 5448714..5449334 (+) 621 WP_064225988.1 homoserine/homoserine lactone efflux protein -
  QDY55_RS27130 (QDY55_27125) rhtC 5449398..5450018 (-) 621 WP_000928829.1 threonine export protein RhtC -
  QDY55_RS27135 (QDY55_27130) recQ 5450082..5451911 (-) 1830 WP_024177878.1 ATP-dependent DNA helicase RecQ Machinery gene
  QDY55_RS27140 (QDY55_27135) pldA 5452044..5452913 (-) 870 WP_001259700.1 phospholipase A -
  QDY55_RS27145 (QDY55_27140) yigI 5453078..5453545 (+) 468 WP_001277142.1 acyl-CoA thioesterase YigI -
  QDY55_RS27150 (QDY55_27145) rarD 5453597..5454487 (+) 891 WP_000339094.1 EamA family transporter RarD -
  QDY55_RS27155 (QDY55_27150) yigG 5454582..5454962 (+) 381 WP_001590939.1 protein YigG -
  QDY55_RS27160 (QDY55_27155) yigF 5454976..5455356 (+) 381 WP_034173738.1 DUF2628 domain-containing protein -
  QDY55_RS27165 (QDY55_27160) corA 5455397..5456347 (-) 951 WP_000947159.1 magnesium/cobalt transporter CorA -
  QDY55_RS27170 (QDY55_27165) ysgD 5456499..5456555 (-) 57 WP_211180520.1 protein YsgD -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68377.53 Da        Isoelectric Point: 7.2544

>NTDB_id=742966 QDY55_RS27135 WP_024177878.1 5450082..5451911(-) (recQ) [Escherichia coli strain ETEC1738]
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD
QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNIRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY
YQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFND
ATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=742966 QDY55_RS27135 WP_024177878.1 5450082..5451911(-) (recQ) [Escherichia coli strain ETEC1738]
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAAACAGGTTTTACAAGAAACCTTTGGCTACCAACAGTTTCG
CCCCGGCCAGGAAGAAATTATCGACACTGTGCTTTCCGGCCGCGATTGCCTCGTCGTCATGCCCACTGGTGGCGGAAAAT
CCCTTTGCTATCAAATCCCTGCCTTATTGCTAAACGGCCTTACCGTGGTTGTTTCACCGCTGATTTCCTTGATGAAAGAT
CAGGTGGATCAACTGCAAGCCAACGGCGTGGCGGCGGCGTGCCTTAACTCGACGCAAACCCGCGAGCAGCAACTTGAAGT
GATGACAGGCTGTCGCACCGGGCAAATCCGCCTGCTTTATATCGCGCCGGAACGCCTGATGCTGGATAACTTTCTTGAGC
ATCTGGCGCACTGGAATCCGGTGTTATTAGCCGTTGATGAAGCACACTGTATCTCCCAATGGGGCCACGATTTCCGCCCG
GAATACGCTGCCCTCGGTCAGCTGCGTCAGCGTTTTCCGACGCTGCCGTTTATGGCGCTGACTGCCACCGCCGACGACAC
CACGCGGCAGGATATCGTGCGCCTGCTGGGGCTGAACGATCCGCTGATTCAAATTAGCAGTTTTGACCGTCCGAATATTC
GCTACATGTTGATGGAGAAGTTCAAACCGCTCGATCAGTTGATGCGCTACGTGCAGGAACAACGCGGTAAGTCGGGGATT
ATTTACTGCAACAGCCGGGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCA
TGCCGGGCTGGAAAATAATATTCGCGCCGACGTGCAGGAGAAATTCCAGCGCGATGACCTGCAAATTGTGGTGGCGACGG
TGGCGTTCGGCATGGGCATCAATAAACCAAACGTCCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTAT
TATCAGGAAACCGGTCGCGCCGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCCGATATGGCGTG
GCTACGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAATTGCAGGATATCGAGCGCCATAAACTCAATGCGATGGGCGCGT
TTGCCGAAGCGCAAACTTGCCGTCGTCTGGTGCTGCTGAACTACTTTGGCGAAGGGCGGCAGGAGCCGTGCGGGAACTGC
GATATCTGCCTCGATCCGCCGAAACAATACGATGGTTCAACCGATGCTCAGATTGCCCTTTCCACCATTGGTCGTGTGAA
TCAGCGGTTTGGGATGGGTTATGTGGTGGAAGTGATTCGTGGCGCTAATAACCAGCGTATCCGCGACTATGGTCATGACA
AACTGAAAGTCTATGGCATGGGCCGTGATAAAAGCCATGAACATTGGGTGAGCGTGATCCGCCAGCTGATTCACCTCGGC
CTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCTGCGCGTCCGGTGCTGCGCGGCGAATCCTC
TTTGCAACTTGCCGTGCCACGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCCTTCGGCGGCAACTACGATCGCA
AACTGTTCGCCAAATTACGCAAACTGCGTAAATCGATTGCCGATGAAAGCAATGTCCCGCCGTACGTGGTGTTTAACGAC
GCAACCTTGATTGAGATGGCGGAACAGATGCCGATCACTGCCAGCGAAATGCTCAGCGTTAACGGCGTTGGGATGCGCAA
GCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAG

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)

Helicase conserved C-terminal domain (Helicase_C)

(223-330)

HRDC domain (HRDC)

(533-599)

DEAD/DEAH box helicase (DEAD)

(28-187)

RQC domain (RQC)

(406-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.034

97.209

0.389