Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QDY55_RS21035 Genome accession   NZ_CP122768
Coordinates   4166210..4166815 (-) Length   201 a.a.
NCBI ID   WP_001195026.1    Uniprot ID   A0A2T3RX43
Organism   Escherichia coli strain ETEC1738     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4161210..4171815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY55_RS21015 (QDY55_21010) aes 4161351..4162310 (+) 960 WP_000801813.1 acetyl esterase -
  QDY55_RS21020 (QDY55_21015) hemH 4162307..4163269 (-) 963 WP_001250117.1 ferrochelatase -
  QDY55_RS21025 (QDY55_21020) adk 4163401..4164045 (-) 645 WP_001220233.1 adenylate kinase -
  QDY55_RS21030 (QDY55_21025) htpG 4164226..4166100 (-) 1875 WP_282870042.1 molecular chaperone HtpG -
  QDY55_RS21035 (QDY55_21030) recR 4166210..4166815 (-) 606 WP_001195026.1 recombination mediator RecR Machinery gene
  QDY55_RS21040 (QDY55_21035) ybaB 4166815..4167144 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QDY55_RS21045 (QDY55_21040) dnaX 4167197..4169128 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  QDY55_RS21050 (QDY55_21045) apt 4169257..4169808 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QDY55_RS21055 (QDY55_21050) ybaN 4169961..4170338 (-) 378 WP_001188906.1 DUF454 family protein -
  QDY55_RS21060 (QDY55_21055) priC 4170408..4170935 (+) 528 WP_000844855.1 primosomal replication protein N'' -
  QDY55_RS21065 (QDY55_21060) rsmS 4170949..4171113 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21904.96 Da        Isoelectric Point: 5.0698

>NTDB_id=742944 QDY55_RS21035 WP_001195026.1 4166210..4166815(-) (recR) [Escherichia coli strain ETEC1738]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYGVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=742944 QDY55_RS21035 WP_001195026.1 4166210..4166815(-) (recR) [Escherichia coli strain ETEC1738]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGCCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGGCGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RX43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.729

99.005

0.453
  recR Bacillus subtilis subsp. subtilis str. 168

45.226

99.005

0.448