Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QDY55_RS17545 Genome accession   NZ_CP122768
Coordinates   3460947..3461576 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain ETEC1738     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3455947..3466576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY55_RS17530 (QDY55_17525) helD 3456189..3458243 (-) 2055 WP_001558928.1 DNA helicase IV -
  QDY55_RS17535 (QDY55_17530) yccF 3458366..3458812 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QDY55_RS17540 (QDY55_17535) yccS 3458822..3460984 (+) 2163 WP_000875038.1 YccS family putative transporter -
  QDY55_RS17545 (QDY55_17540) sxy/tfoX 3460947..3461576 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QDY55_RS17550 (QDY55_17545) sulA 3461795..3462304 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QDY55_RS17555 (QDY55_17550) ompA 3462660..3463700 (+) 1041 WP_001314606.1 porin OmpA -
  QDY55_RS17560 (QDY55_17555) matP 3463776..3464228 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QDY55_RS17565 (QDY55_17560) ycbZ 3464414..3466174 (+) 1761 WP_000156476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=742936 QDY55_RS17545 WP_000839153.1 3460947..3461576(-) (sxy/tfoX) [Escherichia coli strain ETEC1738]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=742936 QDY55_RS17545 WP_000839153.1 3460947..3461576(-) (sxy/tfoX) [Escherichia coli strain ETEC1738]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1