Detailed information NTG0742910

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDY55_RS05730
• Genome accession: NZ_CP122768
• Coordinates: 1185045..1186037 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ETEC1738
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1180045..1191037

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDY55_RS05700 (QDY55_05695)	ispD	1180106..1180816 (+)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDY55_RS05705 (QDY55_05700)	ispF	1180816..1181295 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDY55_RS05710 (QDY55_05705)	truD	1181292..1182341 (+)	1050	WP_282870467.1	tRNA pseudouridine(13) synthase TruD	-
QDY55_RS05715 (QDY55_05710)	surE	1182322..1183083 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDY55_RS05720 (QDY55_05715)	pcm	1183077..1183703 (+)	627	WP_000254706.1	protein-L-isoaspartate O-methyltransferase	-
QDY55_RS05725 (QDY55_05720)	nlpD	1183888..1184982 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QDY55_RS05730 (QDY55_05725)	rpoS	1185045..1186037 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QDY55_RS05735 (QDY55_05730)	-	1186158..1186565 (-)	408	WP_001521151.1	MarR family transcriptional regulator	-
QDY55_RS05740 (QDY55_05735)	-	1186712..1187305 (+)	594	WP_064225920.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QDY55_RS05745 (QDY55_05740)	-	1187305..1188732 (+)	1428	WP_021513182.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QDY55_RS05750 (QDY55_05745)	-	1188743..1188979 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QDY55_RS05755 (QDY55_05750)	ygbN	1189018..1190382 (-)	1365	WP_000104457.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=742910 QDY55_RS05730 WP_000081550.1 1185045..1186037(+) (rpoS) [Escherichia coli strain ETEC1738]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=742910 QDY55_RS05730 WP_000081550.1 1185045..1186037(+) (rpoS) [Escherichia coli strain ETEC1738]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCTATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715