Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   K6K02_RS02890 Genome accession   NZ_AP024626
Coordinates   554805..555446 (+) Length   213 a.a.
NCBI ID   WP_003244318.1    Uniprot ID   P96686
Organism   Bacillus subtilis strain BEST3125     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 549805..560446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K02_RS02860 (BsBEST3125_05150) ydfE 551000..551623 (-) 624 WP_003243530.1 flavin reductase family protein -
  K6K02_RS02865 (BsBEST3125_05160) ydfF 551713..552393 (+) 681 WP_003244115.1 helix-turn-helix transcriptional regulator -
  K6K02_RS02870 (BsBEST3125_05170) ydfG 552473..552916 (-) 444 WP_003242768.1 carboxymuconolactone decarboxylase family protein -
  K6K02_RS02875 (BsBEST3125_05180) - 553002..553181 (-) 180 WP_010886421.1 hypothetical protein -
  K6K02_RS02880 - 553178..553321 (-) 144 WP_003243880.1 hypothetical protein -
  K6K02_RS02885 (BsBEST3125_05190) ydfH 553589..554812 (+) 1224 WP_010886422.1 two-component system sensor histidine kinase YdfH -
  K6K02_RS02890 (BsBEST3125_05200) vraR 554805..555446 (+) 642 WP_003244318.1 two-component system response regulator YdfI Regulator
  K6K02_RS02895 (BsBEST3125_05210) pleJ 555562..557736 (+) 2175 WP_003243548.1 MMPL family transporter -
  K6K02_RS02900 (BsBEST3125_05220) cesA 558148..559050 (-) 903 WP_003242638.1 carboxylesterase -
  K6K02_RS02905 (BsBEST3125_05230) ydfK 559252..559941 (-) 690 WP_003242513.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23973.92 Da        Isoelectric Point: 5.4183

>NTDB_id=74288 K6K02_RS02890 WP_003244318.1 554805..555446(+) (vraR) [Bacillus subtilis strain BEST3125]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=74288 K6K02_RS02890 WP_003244318.1 554805..555446(+) (vraR) [Bacillus subtilis strain BEST3125]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTAGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAAGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCCATCAGAGGAAATGTGCTATTGCAGCCTGATATCCTTAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96686

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362

Multiple sequence alignment