Detailed information NTG0742826

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDW95_RS05060
• Genome accession: NZ_CP122758
• Coordinates: 1033035..1034027 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ETEC1739
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1028035..1039027

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDW95_RS05030 (QDW95_05030)	ispD	1028096..1028806 (+)	711	WP_097740602.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDW95_RS05035 (QDW95_05035)	ispF	1028806..1029285 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDW95_RS05040 (QDW95_05040)	truD	1029282..1030331 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
QDW95_RS05045 (QDW95_05045)	surE	1030312..1031073 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDW95_RS05050 (QDW95_05050)	pcm	1031067..1031693 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDW95_RS05055 (QDW95_05055)	nlpD	1031878..1032972 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QDW95_RS05060 (QDW95_05060)	rpoS	1033035..1034027 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QDW95_RS05065 (QDW95_05065)	ygbN	1034121..1035485 (-)	1365	WP_000104441.1	GntP family transporter	-
QDW95_RS05070 (QDW95_05070)	ygbM	1035574..1036350 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QDW95_RS05075 (QDW95_05075)	ygbL	1036355..1036993 (-)	639	WP_001278994.1	aldolase	-
QDW95_RS05080 (QDW95_05080)	otnK	1036990..1038252 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=742826 QDW95_RS05060 WP_000081550.1 1033035..1034027(+) (rpoS) [Escherichia coli strain ETEC1739]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=742826 QDW95_RS05060 WP_000081550.1 1033035..1034027(+) (rpoS) [Escherichia coli strain ETEC1739]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715