Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QDW95_RS02505 Genome accession   NZ_CP122758
Coordinates   513379..514812 (-) Length   477 a.a.
NCBI ID   WP_196011021.1    Uniprot ID   -
Organism   Escherichia coli strain ETEC1739     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 508379..519812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW95_RS02470 (QDW95_02470) elbB 509070..509723 (+) 654 WP_001300411.1 isoprenoid biosynthesis glyoxalase ElbB -
  QDW95_RS02475 (QDW95_02475) mtgA 509720..510448 (+) 729 WP_000047091.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  QDW95_RS02480 (QDW95_02480) yrbL 510445..511077 (-) 633 WP_000620405.1 PhoP regulatory network protein YrbL -
  QDW95_RS02485 (QDW95_02485) npr 511291..511563 (-) 273 WP_000216791.1 PTS phosphocarrier protein NPr -
  QDW95_RS02490 (QDW95_02490) rapZ 511560..512414 (-) 855 WP_000243741.1 RNase adapter RapZ -
  QDW95_RS02495 (QDW95_02495) ptsN 512460..512951 (-) 492 WP_000183676.1 PTS IIA-like nitrogen regulatory protein PtsN -
  QDW95_RS02500 (QDW95_02500) hpf 513069..513356 (-) 288 WP_001176599.1 ribosome hibernation promoting factor -
  QDW95_RS02505 (QDW95_02505) rpoN/rpoN1 513379..514812 (-) 1434 WP_196011021.1 RNA polymerase factor sigma-54 Machinery gene
  QDW95_RS02510 (QDW95_02510) lptB 514860..515585 (-) 726 WP_000224099.1 LPS export ABC transporter ATP-binding protein -
  QDW95_RS02515 (QDW95_02515) lptA 515592..516149 (-) 558 WP_000669785.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  QDW95_RS02520 (QDW95_02520) lptC 516118..516693 (-) 576 WP_000030537.1 LPS export ABC transporter periplasmic protein LptC -
  QDW95_RS02525 (QDW95_02525) kdsC 516690..517256 (-) 567 WP_000030005.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  QDW95_RS02530 (QDW95_02530) kdsD 517277..518263 (-) 987 WP_001295557.1 arabinose-5-phosphate isomerase KdsD -
  QDW95_RS02535 (QDW95_02535) yrbG 518277..519254 (-) 978 WP_000922901.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53988.80 Da        Isoelectric Point: 4.3837

>NTDB_id=742816 QDW95_RS02505 WP_196011021.1 513379..514812(-) (rpoN/rpoN1) [Escherichia coli strain ETEC1739]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPE
ELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTLQDYLMWQVQLTPFSDTDRAIATSIVDAVDETGYLTVPLED
ILESIGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIR
SNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=742816 QDW95_RS02505 WP_196011021.1 513379..514812(-) (rpoN/rpoN1) [Escherichia coli strain ETEC1739]
ATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACTGGCGATGACGCCACAGCTCCAACAGGCAATTCGTCTGTTGCA
GTTGTCGACGCTGGAACTTCAGCAGGAGCTACAGCAGGCGCTGGAGAGTAATCCGCTGCTTGAGCAAATCGACACTCATG
AAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAA
GAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGA
CGAGCTGCCGGTCTACCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTTCAGCTGACACCGTTTT
CCGACACTGACCGCGCTATTGCTACCTCTATCGTCGATGCCGTTGATGAAACCGGTTATCTGACTGTCCCGCTGGAAGAT
ATTCTCGAAAGTATAGGCGATGAAGAGATCGACATCGACGAAGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCC
GGTCGGTGTGGCGGCAAAAGATCTGCGTGACTGTCTGCTGATCCAACTCTCCCAATTCGATAAGACCACGCCGTGGCTGG
AAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGT
CTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCTCGATCCGCGCCCCGGGCAGTCGATCCAGACTGG
CGAACCTGAGTATGTCATTCCAGATGTGCTGGTGCGTAAGCATAACGGTCACTGGACGGTAGAACTCAACAGTGACAGCA
TTCCGCGTCTGCAAATCAACCAGCACTACGCCTCGATGTGCAATAACGCGCGCAACGATGGTGACAGCCAGTTTATCCGC
AGCAATCTGCAGGATGCCAAATGGTTGATCAAGAGTCTGGAAAGCCGTAACGATACGCTACTGCGCGTGAGTCGCTGTAT
CGTTGAACAGCAGCAAGCCTTCTTTGAGCAAGGTGAAGAATATATGAAACCGATGGTACTGGCCGATATCGCCCAGGCTG
TCGAAATGCATGAATCGACGATATCTCGCGTGACCACGCAAAAATACCTGCATAGTCCACGAGGCATTTTTGAACTGAAG
TATTTCTTTTCCAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTGGTGAAGAAATT
AATCGCGGCGGAAAACCCAGCGAAACCGTTGAGCGACAGCAAGTTAACCTCTTTGCTGTCGGAACAAGGTATCATGGTGG
CACGCCGCACTGTTGCGAAGTACCGAGAGTCTTTATCCATTCCGCCGTCAAACCAGCGTAAACAACTCGTTTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

44.024

100

0.463