Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QDW91_RS16820 Genome accession   NZ_CP122722
Coordinates   3304538..3305167 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain ETEC1747     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3299538..3310167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW91_RS16805 (QDW91_16805) helD 3299780..3301834 (-) 2055 WP_000420537.1 DNA helicase IV -
  QDW91_RS16810 (QDW91_16810) yccF 3301957..3302403 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QDW91_RS16815 (QDW91_16815) yccS 3302413..3304575 (+) 2163 WP_000875044.1 YccS family putative transporter -
  QDW91_RS16820 (QDW91_16820) sxy/tfoX 3304538..3305167 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QDW91_RS16825 (QDW91_16825) sulA 3305386..3305895 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QDW91_RS16830 (QDW91_16830) ompA 3306252..3307304 (+) 1053 WP_001361736.1 porin OmpA -
  QDW91_RS16835 (QDW91_16835) matP 3307379..3307831 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QDW91_RS16840 (QDW91_16840) ycbZ 3308017..3309777 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=742686 QDW91_RS16820 WP_000839153.1 3304538..3305167(-) (sxy/tfoX) [Escherichia coli strain ETEC1747]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=742686 QDW91_RS16820 WP_000839153.1 3304538..3305167(-) (sxy/tfoX) [Escherichia coli strain ETEC1747]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1