Detailed information NTG0742660

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDW91_RS05645
• Genome accession: NZ_CP122722
• Coordinates: 1139979..1140971 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ETEC1747
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1134979..1145971

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDW91_RS05615 (QDW91_05615)	ispD	1135040..1135750 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDW91_RS05620 (QDW91_05620)	ispF	1135750..1136229 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDW91_RS05625 (QDW91_05625)	truD	1136226..1137275 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QDW91_RS05630 (QDW91_05630)	surE	1137256..1138017 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDW91_RS05635 (QDW91_05635)	pcm	1138011..1138637 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDW91_RS05640 (QDW91_05640)	nlpD	1138822..1139916 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QDW91_RS05645 (QDW91_05645)	rpoS	1139979..1140971 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QDW91_RS05650 (QDW91_05650)	ygbN	1141065..1142429 (-)	1365	WP_000104456.1	GntP family transporter	-
QDW91_RS05655 (QDW91_05655)	ygbM	1142518..1143294 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
QDW91_RS05660 (QDW91_05660)	ygbL	1143299..1143937 (-)	639	WP_001278994.1	aldolase	-
QDW91_RS05665 (QDW91_05665)	otnK	1143934..1145196 (-)	1263	WP_236500142.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=742660 QDW91_RS05645 WP_000081550.1 1139979..1140971(+) (rpoS) [Escherichia coli strain ETEC1747]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=742660 QDW91_RS05645 WP_000081550.1 1139979..1140971(+) (rpoS) [Escherichia coli strain ETEC1747]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715