Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QDW92_RS18550 Genome accession   NZ_CP122719
Coordinates   3757270..3757875 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ETEC1748     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3752270..3762875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW92_RS18530 (QDW92_18530) aes 3752411..3753370 (+) 960 WP_000764314.1 acetyl esterase -
  QDW92_RS18535 (QDW92_18535) hemH 3753367..3754329 (-) 963 WP_001250117.1 ferrochelatase -
  QDW92_RS18540 (QDW92_18540) adk 3754461..3755105 (-) 645 WP_001220233.1 adenylate kinase -
  QDW92_RS18545 (QDW92_18545) htpG 3755286..3757160 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QDW92_RS18550 (QDW92_18550) recR 3757270..3757875 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QDW92_RS18555 (QDW92_18555) ybaB 3757875..3758204 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QDW92_RS18560 (QDW92_18560) dnaX 3758257..3760188 (-) 1932 WP_063086077.1 DNA polymerase III subunit gamma/tau -
  QDW92_RS18565 (QDW92_18565) apt 3760317..3760868 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QDW92_RS18570 (QDW92_18570) ybaN 3761021..3761398 (-) 378 WP_001188905.1 DUF454 family protein -
  QDW92_RS18575 (QDW92_18575) priC 3761468..3761995 (+) 528 WP_062875964.1 primosomal replication protein N'' -
  QDW92_RS18580 (QDW92_18580) rsmS 3762009..3762173 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  QDW92_RS18585 (QDW92_18585) tnpA 3762283..3762741 (-) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=742613 QDW92_RS18550 WP_001195025.1 3757270..3757875(-) (recR) [Escherichia coli strain ETEC1748]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=742613 QDW92_RS18550 WP_001195025.1 3757270..3757875(-) (recR) [Escherichia coli strain ETEC1748]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443