Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BsBEST3145_RS21125 Genome accession   NZ_AP024625
Coordinates   4049176..4049865 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain BEST3109     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4044176..4054865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BsBEST3145_RS21105 (BsBEST3109_40780) yxeA 4045105..4045452 (-) 348 WP_003227084.1 YxeA family protein -
  BsBEST3145_RS21110 (BsBEST3109_40790) yxdM 4045466..4047350 (-) 1885 Protein_4127 ABC transporter permease YxdM -
  BsBEST3145_RS21115 tpeL 4047325..4048058 (-) 734 Protein_4128 ABC transporter ATP-binding protein -
  BsBEST3145_RS21120 (BsBEST3109_40830) yxdK 4048202..4049179 (-) 978 WP_014481410.1 two-component system sensor histidine kinase YxdK -
  BsBEST3145_RS21125 (BsBEST3109_40840) braR 4049176..4049865 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  BsBEST3145_RS21130 (BsBEST3109_40850) iolJ 4049973..4050845 (-) 873 WP_014481411.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  BsBEST3145_RS21135 (BsBEST3109_40860) iolI 4050866..4051702 (-) 837 WP_014481412.1 2-keto-myo-inositol isomerase -
  BsBEST3145_RS21140 (BsBEST3109_40870) iolH 4051788..4052657 (-) 870 WP_014481413.1 sugar phosphate isomerase/epimerase family protein -
  BsBEST3145_RS21145 (BsBEST3109_40880) iolG 4052677..4053711 (-) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=74259 BsBEST3145_RS21125 WP_003243527.1 4049176..4049865(-) (braR) [Bacillus subtilis strain BEST3109]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=74259 BsBEST3145_RS21125 WP_003243527.1 4049176..4049865(-) (braR) [Bacillus subtilis strain BEST3109]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATACCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406