Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HZ311_RS12080 Genome accession   NZ_AP019810
Coordinates   2505901..2507580 (+) Length   559 a.a.
NCBI ID   WP_178946723.1    Uniprot ID   A0AAI8RBQ0
Organism   Enterococcus mundtii strain 15-1A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2500901..2512580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ311_RS12050 (EM151A_2493) - 2501200..2502054 (+) 855 WP_010736000.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  HZ311_RS12055 (EM151A_2494) xseA 2502051..2503391 (+) 1341 WP_010735999.1 exodeoxyribonuclease VII large subunit -
  HZ311_RS12060 (EM151A_2495) - 2503393..2503620 (+) 228 WP_010735998.1 exodeoxyribonuclease VII small subunit -
  HZ311_RS12065 (EM151A_2496) - 2503617..2504504 (+) 888 WP_023519346.1 polyprenyl synthetase family protein -
  HZ311_RS12070 (EM151A_2497) - 2504513..2505334 (+) 822 WP_010735996.1 TlyA family RNA methyltransferase -
  HZ311_RS12075 (EM151A_2498) - 2505434..2505883 (+) 450 WP_010735995.1 arginine repressor -
  HZ311_RS12080 (EM151A_2499) recN 2505901..2507580 (+) 1680 WP_178946723.1 DNA repair protein RecN Machinery gene
  HZ311_RS12085 (EM151A_2501) - 2508435..2509892 (+) 1458 WP_023519348.1 hypothetical protein -
  HZ311_RS12090 (EM151A_2502) - 2509947..2510561 (+) 615 WP_010735992.1 hypothetical protein -
  HZ311_RS12095 (EM151A_2503) - 2510749..2511951 (+) 1203 WP_178946724.1 hypothetical protein -
  HZ311_RS12100 (EM151A_2504) - 2511938..2512537 (+) 600 WP_137072067.1 hypothetical protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 62835.96 Da        Isoelectric Point: 4.4848

>NTDB_id=74258 HZ311_RS12080 WP_178946723.1 2505901..2507580(+) (recN) [Enterococcus mundtii strain 15-1A]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGADKCILEGLFEWPKQEGFEALM
KELGIESDGSNLIVRRDMSLAGKNVCRVNGHIVTLANLRRVGSYLVDIQGQNEHQELLQPESHLVLLDRFGDSTFQQKKR
AYQEAYQAYRELERKVRKIQQNEKNYVQRIDMLNFQQEEIAAAQLEVGEEEKLREERDKLSNYQKIVDGLATAYGALSEG
EQSSLDGVGMAVSEIQSIAHLDSEYEAIFDNIQSAYYLLQDAVGDMSRQIDLLELDENRLEEVTQRMETIRQLKRKYGDS
VEAILAYYEEITEELDSSDFTEGQLDKMKNELTQKEEWAFQCAEELHQARKAIASDLEQSILRELKSLYMENTEFEVRFS
TQANGRLDEQGFDIVEFYITTNPGEPLKPLVKVASGGELSRVLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
LKISKYSQVLCITHLPQVAAVADYQYYIVKEVVGGRTQTSVAELAAAERENEIARMLAGSEITPLTIEHAKELLRLAKK

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=74258 HZ311_RS12080 WP_178946723.1 2505901..2507580(+) (recN) [Enterococcus mundtii strain 15-1A]
ATGCTACAAGAAATCAGTATCACCAATTTTGCGATTATTCCTGAATTGCGTTTGTCGTTTCATGAAGGAATGACAGCATT
AACAGGAGAAACCGGAGCCGGTAAGTCAATTATTATTGATGCTTTGGGCTTATTAGCAGGTGGTCGCGGATCAAGTGATT
ATATTCGTCAAGGTGCCGATAAATGTATTCTGGAAGGGTTGTTTGAATGGCCTAAACAAGAAGGTTTTGAAGCTTTGATG
AAAGAGTTAGGGATTGAGTCCGATGGTTCAAATCTGATCGTCCGTCGAGATATGTCTTTAGCAGGTAAGAATGTTTGTCG
AGTGAATGGACATATCGTGACATTAGCGAATTTGCGACGCGTAGGTAGTTATTTAGTGGATATCCAAGGTCAAAATGAAC
ATCAGGAACTATTACAACCTGAATCACATCTTGTGTTACTTGATCGTTTTGGAGACTCGACATTCCAACAGAAAAAAAGA
GCGTACCAAGAAGCCTATCAAGCGTATCGTGAACTTGAAAGAAAAGTACGTAAGATCCAACAAAACGAAAAAAACTATGT
CCAACGTATCGATATGTTGAATTTCCAACAAGAAGAAATCGCAGCCGCCCAATTAGAAGTTGGTGAAGAAGAAAAACTTC
GAGAAGAGCGCGATAAATTAAGTAATTATCAAAAAATCGTCGATGGTTTAGCTACTGCTTATGGGGCGCTCAGTGAAGGT
GAACAAAGTAGTCTTGATGGGGTGGGAATGGCTGTTTCCGAGATCCAAAGTATTGCCCACCTTGATTCAGAGTATGAAGC
AATTTTTGATAATATCCAGAGTGCCTATTATTTATTGCAAGATGCAGTAGGGGACATGAGCAGGCAAATCGATCTGCTTG
AACTGGATGAGAATCGTTTGGAAGAAGTGACGCAACGCATGGAAACGATTCGCCAATTGAAGCGTAAATATGGCGATTCA
GTTGAAGCTATCTTAGCCTACTATGAAGAAATCACAGAAGAATTGGATTCATCTGATTTTACAGAAGGTCAACTTGATAA
AATGAAGAATGAACTGACTCAAAAAGAAGAGTGGGCGTTTCAATGTGCAGAAGAACTCCATCAAGCAAGAAAAGCGATCG
CCAGTGACTTAGAACAGTCGATTCTGCGTGAATTAAAGAGTCTTTATATGGAAAACACCGAATTTGAAGTTCGTTTTTCA
ACGCAAGCAAATGGACGCTTAGATGAGCAAGGTTTTGATATTGTCGAATTTTATATCACGACAAATCCTGGAGAACCATT
GAAGCCACTAGTCAAGGTAGCATCAGGTGGGGAATTGTCACGAGTATTACTTGCTCTGAAAACCATTTTTTCTTCGGAAC
AAGGTGTGACTAGTATCATTTTTGACGAAGTTGATACTGGTGTTAGTGGCAGAGTGGCACAAGCCATTGCGGATAAAATA
TTGAAAATATCCAAATATTCCCAAGTACTTTGTATCACGCATCTTCCTCAAGTGGCGGCGGTAGCGGATTATCAATATTA
CATTGTAAAAGAAGTCGTCGGCGGAAGAACACAAACATCCGTCGCCGAATTAGCTGCAGCTGAAAGAGAAAATGAAATCG
CACGAATGTTAGCGGGAAGTGAAATCACGCCTTTAACGATCGAACACGCCAAAGAGTTGTTACGTTTGGCGAAAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

50.526

100

0.515

Multiple sequence alignment