Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BsBEST3145_RS19550 Genome accession   NZ_AP024625
Coordinates   3738907..3740040 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain BEST3109     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3733907..3745040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BsBEST3145_RS19510 (BsBEST3109_37580) ywnA 3734037..3734438 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  BsBEST3145_RS19515 (BsBEST3109_37590) ureC 3734573..3736282 (-) 1710 WP_014481168.1 urease subunit alpha -
  BsBEST3145_RS19520 (BsBEST3109_37600) ureB 3736279..3736653 (-) 375 WP_014481169.1 urease subunit beta -
  BsBEST3145_RS19525 (BsBEST3109_37610) ureA 3736650..3736967 (-) 318 WP_014478236.1 urease subunit gamma -
  BsBEST3145_RS19530 - 3737161..3737319 (-) 159 WP_158332665.1 hypothetical protein -
  BsBEST3145_RS22095 - 3737586..3737798 (-) 213 Protein_3807 urea ABC transporter substrate-binding protein -
  BsBEST3145_RS19540 (BsBEST3109_37630) csbD 3738011..3738199 (-) 189 WP_014481173.1 stress response protein CsbD -
  BsBEST3145_RS19545 (BsBEST3109_37640) - 3738272..3738751 (-) 480 WP_026113664.1 hypothetical protein -
  BsBEST3145_RS19550 (BsBEST3109_37650) rapC 3738907..3740040 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  BsBEST3145_RS19555 (BsBEST3109_37660) moaA 3740232..3741257 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  BsBEST3145_RS19560 (BsBEST3109_37670) fdhD 3741273..3742061 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  BsBEST3145_RS19565 (BsBEST3109_37680) - 3742307..3742468 (-) 162 WP_003227706.1 hypothetical protein -
  BsBEST3145_RS19570 (BsBEST3109_37690) ywmD 3742562..3743236 (-) 675 WP_003243553.1 VWA domain-containing protein -
  BsBEST3145_RS19575 - 3743289..3743429 (-) 141 WP_003227702.1 hypothetical protein -
  BsBEST3145_RS19580 (BsBEST3109_37700) ywmC 3743560..3744243 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=74252 BsBEST3145_RS19550 WP_003227715.1 3738907..3740040(-) (rapC) [Bacillus subtilis strain BEST3109]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=74252 BsBEST3145_RS19550 WP_003227715.1 3738907..3740040(-) (rapC) [Bacillus subtilis strain BEST3109]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424

Multiple sequence alignment