Detailed information NTG0742495

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDX02_RS04065
• Genome accession: NZ_CP122712
• Coordinates: 826580..827572 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ETEC1749
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 821580..832572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDX02_RS04045 (QDX02_04045)	otnK	822355..823617 (+)	1263	WP_000590404.1	3-oxo-tetronate kinase	-
QDX02_RS04050 (QDX02_04050)	ygbL	823614..824252 (+)	639	WP_001278994.1	aldolase	-
QDX02_RS04055 (QDX02_04055)	ygbM	824257..825033 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
QDX02_RS04060 (QDX02_04060)	ygbN	825122..826486 (+)	1365	WP_000104429.1	GntP family transporter	-
QDX02_RS04065 (QDX02_04065)	rpoS	826580..827572 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QDX02_RS04070 (QDX02_04070)	nlpD	827635..828729 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QDX02_RS04075 (QDX02_04075)	pcm	828914..829540 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDX02_RS04080 (QDX02_04080)	surE	829534..830295 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDX02_RS04085 (QDX02_04085)	truD	830276..831325 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QDX02_RS04090 (QDX02_04090)	ispF	831322..831801 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDX02_RS04095 (QDX02_04095)	ispD	831801..832511 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=742495 QDX02_RS04065 WP_000081550.1 826580..827572(-) (rpoS) [Escherichia coli strain ETEC1749]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=742495 QDX02_RS04065 WP_000081550.1 826580..827572(-) (rpoS) [Escherichia coli strain ETEC1749]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715