Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QDW67_RS18155 Genome accession   NZ_CP122681
Coordinates   3700233..3700838 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ETEC4068     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3695233..3705838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW67_RS18135 (QDW67_18135) aes 3695374..3696333 (+) 960 WP_000764314.1 acetyl esterase -
  QDW67_RS18140 (QDW67_18140) hemH 3696330..3697292 (-) 963 WP_001250117.1 ferrochelatase -
  QDW67_RS18145 (QDW67_18145) adk 3697424..3698068 (-) 645 WP_001220233.1 adenylate kinase -
  QDW67_RS18150 (QDW67_18150) htpG 3698249..3700123 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QDW67_RS18155 (QDW67_18155) recR 3700233..3700838 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QDW67_RS18160 (QDW67_18160) ybaB 3700838..3701167 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QDW67_RS18165 (QDW67_18165) dnaX 3701220..3703151 (-) 1932 WP_063086077.1 DNA polymerase III subunit gamma/tau -
  QDW67_RS18170 (QDW67_18170) apt 3703280..3703831 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QDW67_RS18175 (QDW67_18175) ybaN 3703984..3704361 (-) 378 WP_059343086.1 DUF454 family protein -
  QDW67_RS18180 (QDW67_18180) priC 3704431..3704958 (+) 528 WP_062875964.1 primosomal replication protein N'' -
  QDW67_RS18185 (QDW67_18185) rsmS 3704972..3705136 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  QDW67_RS18190 (QDW67_18190) tnpA 3705246..3705704 (-) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=742365 QDW67_RS18155 WP_001195025.1 3700233..3700838(-) (recR) [Escherichia coli strain ETEC4068]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=742365 QDW67_RS18155 WP_001195025.1 3700233..3700838(-) (recR) [Escherichia coli strain ETEC4068]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443