Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QDW67_RS15535 Genome accession   NZ_CP122681
Coordinates   3134496..3135125 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain ETEC4068     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3129496..3140125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW67_RS15520 (QDW67_15520) helD 3129738..3131792 (-) 2055 WP_063085342.1 DNA helicase IV -
  QDW67_RS15525 (QDW67_15525) yccF 3131915..3132361 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QDW67_RS15530 (QDW67_15530) yccS 3132371..3134533 (+) 2163 WP_000875041.1 YccS family putative transporter -
  QDW67_RS15535 (QDW67_15535) sxy/tfoX 3134496..3135125 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QDW67_RS15540 (QDW67_15540) sulA 3135344..3135853 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  QDW67_RS15545 (QDW67_15545) ompA 3136209..3137261 (+) 1053 WP_000750418.1 porin OmpA -
  QDW67_RS15550 (QDW67_15550) matP 3137337..3137789 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QDW67_RS15555 (QDW67_15555) ycbZ 3137975..3139735 (+) 1761 WP_063085344.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=742358 QDW67_RS15535 WP_000839153.1 3134496..3135125(-) (sxy/tfoX) [Escherichia coli strain ETEC4068]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=742358 QDW67_RS15535 WP_000839153.1 3134496..3135125(-) (sxy/tfoX) [Escherichia coli strain ETEC4068]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1