Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   QDW53_RS05310 Genome accession   NZ_CP122679
Coordinates   1111650..1112642 (+) Length   330 a.a.
NCBI ID   WP_063086191.1    Uniprot ID   -
Organism   Escherichia coli strain ETEC4069     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1106650..1117642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW53_RS05280 (QDW53_05280) ispD 1106711..1107421 (+) 711 WP_063086188.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QDW53_RS05285 (QDW53_05285) ispF 1107421..1107900 (+) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QDW53_RS05290 (QDW53_05290) truD 1107897..1108946 (+) 1050 WP_063086189.1 tRNA pseudouridine(13) synthase TruD -
  QDW53_RS05295 (QDW53_05295) surE 1108927..1109688 (+) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  QDW53_RS05300 (QDW53_05300) pcm 1109682..1110308 (+) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  QDW53_RS05305 (QDW53_05305) nlpD 1110493..1111587 (+) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  QDW53_RS05310 (QDW53_05310) rpoS 1111650..1112642 (+) 993 WP_063086191.1 RNA polymerase sigma factor RpoS Regulator
  QDW53_RS05315 (QDW53_05315) - 1112762..1113169 (-) 408 WP_001208077.1 MarR family transcriptional regulator -
  QDW53_RS05320 (QDW53_05320) - 1113316..1113909 (+) 594 WP_000767723.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  QDW53_RS05325 (QDW53_05325) - 1113909..1115336 (+) 1428 WP_021513182.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  QDW53_RS05330 (QDW53_05330) - 1115347..1115583 (+) 237 WP_000562982.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  QDW53_RS05335 (QDW53_05335) pphB 1115624..1116151 (-) 528 Protein_1046 protein-serine/threonine phosphatase -
  QDW53_RS05345 (QDW53_05345) - 1116926..1117057 (-) 132 Protein_1048 serine/threonine protein phosphatase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 38000.90 Da        Isoelectric Point: 4.5597

>NTDB_id=742252 QDW53_RS05310 WP_063086191.1 1111650..1112642(+) (rpoS) [Escherichia coli strain ETEC4069]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILVD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=742252 QDW53_RS05310 WP_063086191.1 1111650..1112642(+) (rpoS) [Escherichia coli strain ETEC4069]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGTCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715