Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   QDW57_RS05350 Genome accession   NZ_CP122676
Coordinates   1115183..1116175 (+) Length   330 a.a.
NCBI ID   WP_063086191.1    Uniprot ID   -
Organism   Escherichia coli strain ETEC4070     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1110183..1121175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW57_RS05320 (QDW57_05320) ispD 1110244..1110954 (+) 711 WP_063086188.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QDW57_RS05325 (QDW57_05325) ispF 1110954..1111433 (+) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QDW57_RS05330 (QDW57_05330) truD 1111430..1112479 (+) 1050 WP_063086189.1 tRNA pseudouridine(13) synthase TruD -
  QDW57_RS05335 (QDW57_05335) surE 1112460..1113221 (+) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  QDW57_RS05340 (QDW57_05340) pcm 1113215..1113841 (+) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  QDW57_RS05345 (QDW57_05345) nlpD 1114026..1115120 (+) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  QDW57_RS05350 (QDW57_05350) rpoS 1115183..1116175 (+) 993 WP_063086191.1 RNA polymerase sigma factor RpoS Regulator
  QDW57_RS05355 (QDW57_05355) - 1116295..1116702 (-) 408 WP_001208077.1 MarR family transcriptional regulator -
  QDW57_RS05360 (QDW57_05360) - 1116849..1117442 (+) 594 WP_000767723.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  QDW57_RS05365 (QDW57_05365) - 1117442..1118869 (+) 1428 WP_021513182.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  QDW57_RS05370 (QDW57_05370) - 1118880..1119116 (+) 237 WP_000562982.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  QDW57_RS05375 (QDW57_05375) pphB 1119157..1119684 (-) 528 Protein_1052 protein-serine/threonine phosphatase -
  QDW57_RS05385 (QDW57_05385) - 1120459..1120590 (-) 132 Protein_1054 serine/threonine protein phosphatase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 38000.90 Da        Isoelectric Point: 4.5597

>NTDB_id=742170 QDW57_RS05350 WP_063086191.1 1115183..1116175(+) (rpoS) [Escherichia coli strain ETEC4070]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILVD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=742170 QDW57_RS05350 WP_063086191.1 1115183..1116175(+) (rpoS) [Escherichia coli strain ETEC4070]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGTCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715