Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QDW61_RS18515 Genome accession   NZ_CP122652
Coordinates   3746671..3747276 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ETEC4075     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3741671..3752276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW61_RS18495 (QDW61_18495) aes 3741812..3742771 (+) 960 WP_000764314.1 acetyl esterase -
  QDW61_RS18500 (QDW61_18500) hemH 3742768..3743730 (-) 963 WP_001250117.1 ferrochelatase -
  QDW61_RS18505 (QDW61_18505) adk 3743862..3744506 (-) 645 WP_001220233.1 adenylate kinase -
  QDW61_RS18510 (QDW61_18510) htpG 3744687..3746561 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QDW61_RS18515 (QDW61_18515) recR 3746671..3747276 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QDW61_RS18520 (QDW61_18520) ybaB 3747276..3747605 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QDW61_RS18525 (QDW61_18525) dnaX 3747658..3749589 (-) 1932 WP_063086077.1 DNA polymerase III subunit gamma/tau -
  QDW61_RS18530 (QDW61_18530) apt 3749718..3750269 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QDW61_RS18535 (QDW61_18535) ybaN 3750422..3750799 (-) 378 WP_059343086.1 DUF454 family protein -
  QDW61_RS18540 (QDW61_18540) priC 3750869..3751396 (+) 528 WP_062875964.1 primosomal replication protein N'' -
  QDW61_RS18545 (QDW61_18545) rsmS 3751410..3751574 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  QDW61_RS18550 (QDW61_18550) tnpA 3751684..3752142 (-) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=741955 QDW61_RS18515 WP_001195025.1 3746671..3747276(-) (recR) [Escherichia coli strain ETEC4075]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=741955 QDW61_RS18515 WP_001195025.1 3746671..3747276(-) (recR) [Escherichia coli strain ETEC4075]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443