Detailed information NTG0741923

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDW61_RS05550
• Genome accession: NZ_CP122652
• Coordinates: 1162369..1163361 (+)
• Length: 330 a.a.
• NCBI ID: WP_063086191.1
• Uniprot ID: -
• Organism: Escherichia coli strain ETEC4075
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1157369..1168361

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDW61_RS05520 (QDW61_05520)	ispD	1157430..1158140 (+)	711	WP_063086188.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDW61_RS05525 (QDW61_05525)	ispF	1158140..1158619 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDW61_RS05530 (QDW61_05530)	truD	1158616..1159665 (+)	1050	WP_063086189.1	tRNA pseudouridine(13) synthase TruD	-
QDW61_RS05535 (QDW61_05535)	surE	1159646..1160407 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDW61_RS05540 (QDW61_05540)	pcm	1160401..1161027 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDW61_RS05545 (QDW61_05545)	nlpD	1161212..1162306 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QDW61_RS05550 (QDW61_05550)	rpoS	1162369..1163361 (+)	993	WP_063086191.1	RNA polymerase sigma factor RpoS	Regulator
QDW61_RS05555 (QDW61_05555)	-	1163481..1163888 (-)	408	WP_001208077.1	MarR family transcriptional regulator	-
QDW61_RS05560 (QDW61_05560)	-	1164035..1164628 (+)	594	WP_000767723.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QDW61_RS05565 (QDW61_05565)	-	1164628..1166055 (+)	1428	WP_021513182.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QDW61_RS05570 (QDW61_05570)	-	1166066..1166302 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QDW61_RS05575 (QDW61_05575)	pphB	1166343..1166999 (-)	657	WP_001590575.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38000.90 Da
• Isoelectric Point: 4.5597

>NTDB_id=741923 QDW61_RS05550 WP_063086191.1 1162369..1163361(+) (rpoS) [Escherichia coli strain ETEC4075]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILVD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=741923 QDW61_RS05550 WP_063086191.1 1162369..1163361(+) (rpoS) [Escherichia coli strain ETEC4075]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGTCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715