Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECKY1497_RS11270 Genome accession   NZ_AP019803
Coordinates   2317458..2318087 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain KY 1497     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2312458..2323087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECKY1497_RS11255 (ECKY1497_021410) helD 2312700..2314754 (-) 2055 WP_020232990.1 DNA helicase IV -
  ECKY1497_RS11260 (ECKY1497_021420) yccF 2314877..2315323 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ECKY1497_RS11265 (ECKY1497_021430) yccS 2315333..2317495 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ECKY1497_RS11270 (ECKY1497_021440) sxy/tfoX 2317458..2318087 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECKY1497_RS11275 (ECKY1497_021450) sulA 2318306..2318815 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECKY1497_RS11280 (ECKY1497_021460) ompA 2319172..2320224 (+) 1053 WP_000750418.1 porin OmpA -
  ECKY1497_RS11285 (ECKY1497_021470) matP 2320299..2320751 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ECKY1497_RS11290 (ECKY1497_021480) ycbZ 2320937..2322697 (+) 1761 WP_029701764.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=74188 ECKY1497_RS11270 WP_000839153.1 2317458..2318087(-) (sxy/tfoX) [Escherichia coli strain KY 1497]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=74188 ECKY1497_RS11270 WP_000839153.1 2317458..2318087(-) (sxy/tfoX) [Escherichia coli strain KY 1497]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment