Detailed information NTG0741841

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDY56_RS05465
• Genome accession: NZ_CP122648
• Coordinates: 1134496..1135488 (+)
• Length: 330 a.a.
• NCBI ID: WP_063086191.1
• Uniprot ID: -
• Organism: Escherichia coli strain ETEC4077
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1129496..1140488

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDY56_RS05435 (QDY56_05435)	ispD	1129557..1130267 (+)	711	WP_063086188.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDY56_RS05440 (QDY56_05440)	ispF	1130267..1130746 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDY56_RS05445 (QDY56_05445)	truD	1130743..1131792 (+)	1050	WP_063086189.1	tRNA pseudouridine(13) synthase TruD	-
QDY56_RS05450 (QDY56_05450)	surE	1131773..1132534 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDY56_RS05455 (QDY56_05455)	pcm	1132528..1133154 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDY56_RS05460 (QDY56_05460)	nlpD	1133339..1134433 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QDY56_RS05465 (QDY56_05465)	rpoS	1134496..1135488 (+)	993	WP_063086191.1	RNA polymerase sigma factor RpoS	Regulator
QDY56_RS05470 (QDY56_05470)	-	1135608..1136015 (-)	408	WP_001208077.1	MarR family transcriptional regulator	-
QDY56_RS05475 (QDY56_05475)	-	1136162..1136755 (+)	594	WP_000767723.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QDY56_RS05480 (QDY56_05480)	-	1136755..1138182 (+)	1428	WP_021513182.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QDY56_RS05485 (QDY56_05485)	-	1138193..1138429 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QDY56_RS05495 (QDY56_05495)	-	1139472..1139603 (-)	132	Protein_1076	serine/threonine protein phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38000.90 Da
• Isoelectric Point: 4.5597

>NTDB_id=741841 QDY56_RS05465 WP_063086191.1 1134496..1135488(+) (rpoS) [Escherichia coli strain ETEC4077]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILVD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=741841 QDY56_RS05465 WP_063086191.1 1134496..1135488(+) (rpoS) [Escherichia coli strain ETEC4077]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGTCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715