Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   QDW55_RS03925 Genome accession   NZ_CP122643
Coordinates   822017..823207 (-) Length   396 a.a.
NCBI ID   WP_063085020.1    Uniprot ID   -
Organism   Escherichia coli strain ETEC4079     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 817017..828207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW55_RS03915 (QDW55_03915) - 819281..820318 (+) 1038 WP_033870964.1 glycosyltransferase family 1 protein -
  QDW55_RS03920 (QDW55_03920) - 820581..821274 (-) 694 Protein_767 IS1 family transposase -
  QDW55_RS03925 (QDW55_03925) kpsS 822017..823207 (-) 1191 WP_063085020.1 capsular biosynthesis protein Regulator
  QDW55_RS03930 (QDW55_03930) - 823242..825269 (-) 2028 WP_063085021.1 capsular polysaccharide biosynthesis protein -
  QDW55_RS03935 (QDW55_03935) kdsB 825266..826006 (-) 741 WP_000030759.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QDW55_RS03940 (QDW55_03940) - 826016..827692 (-) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 396 a.a.        Molecular weight: 47314.63 Da        Isoelectric Point: 10.0561

>NTDB_id=741757 QDW55_RS03925 WP_063085020.1 822017..823207(-) (kpsS) [Escherichia coli strain ETEC4079]
MHGDALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENFKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNATYYGIFSLRV

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=741757 QDW55_RS03925 WP_063085020.1 822017..823207(-) (kpsS) [Escherichia coli strain ETEC4079]
ATGCACGGTGATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTTAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGTTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGTAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGCAACTTATTATGGAATTTTCTCACTCAGAGTATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.848

99.495

0.396