Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   TthHC11_RS07420 Genome accession   NZ_AP019801
Coordinates   1386794..1387672 (+) Length   292 a.a.
NCBI ID   WP_143591391.1    Uniprot ID   -
Organism   Thermus thermophilus strain HC11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1381794..1392672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TthHC11_RS07395 (TthHC11_14390) - 1382792..1383283 (+) 492 WP_011173430.1 DUF5317 domain-containing protein -
  TthHC11_RS07400 (TthHC11_14400) - 1383338..1384342 (+) 1005 WP_011173431.1 homoisocitrate dehydrogenase -
  TthHC11_RS07405 (TthHC11_14410) pilM 1384477..1385610 (+) 1134 WP_143591386.1 type IV pilus assembly protein PilM Machinery gene
  TthHC11_RS07410 (TthHC11_14420) pilN 1385603..1386226 (+) 624 WP_011173433.1 competence protein Machinery gene
  TthHC11_RS07415 (TthHC11_14430) pilO 1386216..1386797 (+) 582 WP_143591389.1 type 4a pilus biogenesis protein PilO Machinery gene
  TthHC11_RS07420 (TthHC11_14440) pilW 1386794..1387672 (+) 879 WP_143591391.1 competence protein Machinery gene
  TthHC11_RS07425 (TthHC11_14450) pilQ 1387669..1389942 (+) 2274 WP_143591393.1 secretin N-terminal domain-containing protein Machinery gene
  TthHC11_RS07430 (TthHC11_14460) aroC 1390001..1391152 (+) 1152 WP_143591395.1 chorismate synthase -
  TthHC11_RS07435 (TthHC11_14470) - 1391177..1391731 (+) 555 WP_008632876.1 shikimate kinase -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 29794.33 Da        Isoelectric Point: 4.6515

>NTDB_id=74174 TthHC11_RS07420 WP_143591391.1 1386794..1387672(+) (pilW) [Thermus thermophilus strain HC11]
MKNAWQRLKEAWANLPRSTKILLAALLLVGGVALWYVGLYLPAQVAEAPTPAPSTQVIEAPPIPPLASQEEAKPPAEAPA
QEEAQAPASSQEEAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPASASRPTPVPEGPAVRVQTPAQAPQAAPATRPIPG
TSGALPAPKVLSPALSAPLPQARETPPKVAVPTALVEAPLPGPEEKGAEKAPTPASPLERLVAEKGLRLSGTLLGPVSVA
ILESKEGYLVVPVGSPIPGTEAVVRQVEEGSVTLALKEETLSLSLVQAGGGQ

Nucleotide


Download         Length: 879 bp        

>NTDB_id=74174 TthHC11_RS07420 WP_143591391.1 1386794..1387672(+) (pilW) [Thermus thermophilus strain HC11]
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGCCAACCTGCCCAGGTCCACCAAGATCCTCCTGGCGGCCCTCCT
TCTCGTGGGGGGCGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGGCGGAAGCGCCCACCCCGGCCCCCT
CCACGCAGGTCATCGAGGCCCCCCCGATCCCGCCCCTCGCCTCCCAGGAAGAGGCCAAGCCGCCGGCCGAAGCCCCGGCC
CAAGAGGAGGCCCAGGCGCCCGCTTCTTCCCAAGAGGAGGCCCAGGCGCCCCCGCCCGCCCCCGTGGCCCGGGCCGAGCC
CCCGCCCCCGAACCCCTTCGTCCCCCTGGTGGTGGAAACCCCACCCCCACCTCCGGCCTCCGCCTCCCGCCCCACGCCCG
TCCCCGAGGGGCCCGCCGTCCGGGTCCAGACCCCCGCCCAAGCCCCCCAGGCGGCCCCCGCCACCCGGCCCATCCCCGGG
ACCTCCGGCGCCCTCCCGGCGCCCAAGGTCCTCTCCCCCGCGCTGTCCGCCCCCCTGCCCCAGGCCAGGGAGACGCCGCC
CAAGGTCGCCGTGCCCACGGCGCTCGTGGAGGCCCCCCTCCCCGGGCCCGAGGAAAAGGGGGCGGAGAAGGCCCCCACCC
CGGCCTCGCCGCTGGAGCGCCTGGTGGCGGAAAAGGGCCTCCGCCTCTCGGGGACCCTGCTCGGCCCCGTGAGCGTGGCC
ATCCTGGAGAGCAAGGAGGGCTACCTCGTGGTCCCTGTGGGAAGCCCCATCCCCGGCACGGAGGCCGTGGTGCGCCAGGT
GGAGGAAGGAAGCGTGACCCTGGCCTTGAAGGAGGAAACCTTGAGCCTGTCCCTCGTCCAAGCTGGAGGTGGCCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

97.945

100

0.979

Multiple sequence alignment