Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QDW62_RS19935 Genome accession   NZ_CP122634
Coordinates   3954233..3954838 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ETEC4085     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3949233..3959838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW62_RS19915 (QDW62_19915) aes 3949270..3950229 (+) 960 WP_000801804.1 acetyl esterase -
  QDW62_RS19920 (QDW62_19920) hemH 3950226..3951188 (-) 963 WP_001250103.1 ferrochelatase -
  QDW62_RS19925 (QDW62_19925) adk 3951424..3952068 (-) 645 WP_001220233.1 adenylate kinase -
  QDW62_RS19930 (QDW62_19930) htpG 3952249..3954123 (-) 1875 WP_061354212.1 molecular chaperone HtpG -
  QDW62_RS19935 (QDW62_19935) recR 3954233..3954838 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QDW62_RS19940 (QDW62_19940) ybaB 3954838..3955167 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QDW62_RS19945 (QDW62_19945) dnaX 3955220..3957151 (-) 1932 WP_236294998.1 DNA polymerase III subunit gamma/tau -
  QDW62_RS19950 (QDW62_19950) apt 3957280..3957831 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QDW62_RS19955 (QDW62_19955) ybaN 3957984..3958361 (-) 378 WP_001188905.1 DUF454 family protein -
  QDW62_RS19960 (QDW62_19960) priC 3958431..3958958 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  QDW62_RS19965 (QDW62_19965) rsmS 3958972..3959133 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=741713 QDW62_RS19935 WP_001195025.1 3954233..3954838(-) (recR) [Escherichia coli strain ETEC4085]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=741713 QDW62_RS19935 WP_001195025.1 3954233..3954838(-) (recR) [Escherichia coli strain ETEC4085]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443