Detailed information
Bioinformatically predicted
Overview
| Name | pilM | Type | Machinery gene |
| Locus tag | TthHC11_RS07405 | Genome accession | NZ_AP019801 |
| Coordinates | 1384477..1385610 (+) | Length | 377 a.a. |
| NCBI ID | WP_143591386.1 | Uniprot ID | - |
| Organism | Thermus thermophilus strain HC11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1379477..1390610
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TthHC11_RS07370 (TthHC11_14360) | - | 1379479..1380237 (+) | 759 | WP_011228633.1 | type III pantothenate kinase | - |
| TthHC11_RS07375 (TthHC11_14370) | - | 1380200..1380565 (-) | 366 | WP_024119691.1 | hypothetical protein | - |
| TthHC11_RS07390 (TthHC11_14380) | - | 1381335..1382741 (+) | 1407 | WP_143591384.1 | HD-GYP domain-containing protein | - |
| TthHC11_RS07395 (TthHC11_14390) | - | 1382792..1383283 (+) | 492 | WP_011173430.1 | DUF5317 domain-containing protein | - |
| TthHC11_RS07400 (TthHC11_14400) | - | 1383338..1384342 (+) | 1005 | WP_011173431.1 | homoisocitrate dehydrogenase | - |
| TthHC11_RS07405 (TthHC11_14410) | pilM | 1384477..1385610 (+) | 1134 | WP_143591386.1 | type IV pilus assembly protein PilM | Machinery gene |
| TthHC11_RS07410 (TthHC11_14420) | pilN | 1385603..1386226 (+) | 624 | WP_011173433.1 | competence protein | Machinery gene |
| TthHC11_RS07415 (TthHC11_14430) | pilO | 1386216..1386797 (+) | 582 | WP_143591389.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| TthHC11_RS07420 (TthHC11_14440) | pilW | 1386794..1387672 (+) | 879 | WP_143591391.1 | competence protein | Machinery gene |
| TthHC11_RS07425 (TthHC11_14450) | pilQ | 1387669..1389942 (+) | 2274 | WP_143591393.1 | secretin N-terminal domain-containing protein | Machinery gene |
Sequence
Protein
Download Length: 377 a.a. Molecular weight: 41378.00 Da Isoelectric Point: 4.4145
>NTDB_id=74171 TthHC11_RS07405 WP_143591386.1 1384477..1385610(+) (pilM) [Thermus thermophilus strain HC11]
MFKSLSQLFRPRVEALGLEIGASALKLVEVSGNPPALKALASRPTPPGLLMEGMVAEPAALAQEIKELLLEARTRKRYVV
TALSNLAVILRPIQVPKMPLKEMEEAVRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQVMVAAARQEAVAGVLEAL
RGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAVRVLTLSGKDFTEAIARSFNLDLLA
AEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLR
GLASLLTDTLGVNFEPVNPWEAVAVDPKRFEAEHLQEMGPEFAVALGLALRGVEPLD
MFKSLSQLFRPRVEALGLEIGASALKLVEVSGNPPALKALASRPTPPGLLMEGMVAEPAALAQEIKELLLEARTRKRYVV
TALSNLAVILRPIQVPKMPLKEMEEAVRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQVMVAAARQEAVAGVLEAL
RGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAVRVLTLSGKDFTEAIARSFNLDLLA
AEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLR
GLASLLTDTLGVNFEPVNPWEAVAVDPKRFEAEHLQEMGPEFAVALGLALRGVEPLD
Nucleotide
Download Length: 1134 bp
>NTDB_id=74171 TthHC11_RS07405 WP_143591386.1 1384477..1385610(+) (pilM) [Thermus thermophilus strain HC11]
GTGTTCAAAAGCCTTAGCCAGCTCTTCCGACCCAGGGTTGAGGCCCTGGGGTTGGAGATCGGGGCCTCCGCCCTGAAGCT
CGTGGAGGTGTCCGGGAACCCCCCTGCCCTCAAGGCCCTGGCCTCCCGCCCCACCCCGCCCGGCCTCCTGATGGAGGGGA
TGGTGGCCGAGCCCGCCGCGCTGGCCCAGGAGATCAAGGAGCTTCTCCTCGAGGCCCGCACCCGCAAGCGCTACGTGGTC
ACCGCCCTCTCCAACCTGGCGGTGATCCTCCGCCCCATCCAGGTTCCCAAGATGCCCCTCAAGGAGATGGAGGAGGCGGT
GCGCTGGGAGGCGGAGCGCTACATTCCCTTCCCCATTGACGAGGTGGTCCTGGACTTCGCCCCCCTGACCCCCCTCTCCG
AGGTGCAGGAGGGGGAGCAGGTCCAGGTGATGGTGGCGGCGGCGCGGCAGGAGGCGGTGGCGGGGGTCCTCGAGGCCCTG
AGGGGGGCGGGGCTCGTCCCCGTGGTGCTGGACGTGAAGCCCTTCGCCGGGCTTTACCCTCTGGAGGCCAGGCTTGCGGA
GGAGCCCGACCGGGTCTTCCTCGTCCTGGACATCGGGGCCGAGAGCACGAGCCTCGTCCTGCTCCGGGGGGACAAGCCCC
TGGCGGTGCGCGTCCTCACGCTCTCGGGCAAGGACTTCACCGAGGCCATCGCCCGAAGCTTCAACCTGGACCTCCTCGCC
GCCGAGGAGGTGAAGCGGACCTACGGGATGGCCACCCTCCCCACCGAGGACGAGGAGCTCCTCCTGGACTTTGACGCCGA
GCGGGAGCGCTACAGCCCGGGGCGCATCTACGACGCCATCCGCCCGGTGCTGGTGGAGCTCACCCAGGAGCTCCGCCGCA
GCCTGGAGTTCTTCCGCATCCAGCTGGAGGAGGCCTCGCCCGAGGTGGGCTACCTCCTGGGCGGGGGGAGCAAGCTCAGG
GGGCTCGCCTCCCTCCTCACCGACACCCTGGGGGTGAACTTTGAGCCCGTCAACCCCTGGGAGGCGGTGGCGGTGGACCC
CAAGCGCTTTGAGGCGGAACACCTCCAGGAGATGGGGCCGGAGTTCGCCGTGGCCCTGGGCTTGGCGTTGAGGGGGGTGG
AGCCCCTTGATTAG
GTGTTCAAAAGCCTTAGCCAGCTCTTCCGACCCAGGGTTGAGGCCCTGGGGTTGGAGATCGGGGCCTCCGCCCTGAAGCT
CGTGGAGGTGTCCGGGAACCCCCCTGCCCTCAAGGCCCTGGCCTCCCGCCCCACCCCGCCCGGCCTCCTGATGGAGGGGA
TGGTGGCCGAGCCCGCCGCGCTGGCCCAGGAGATCAAGGAGCTTCTCCTCGAGGCCCGCACCCGCAAGCGCTACGTGGTC
ACCGCCCTCTCCAACCTGGCGGTGATCCTCCGCCCCATCCAGGTTCCCAAGATGCCCCTCAAGGAGATGGAGGAGGCGGT
GCGCTGGGAGGCGGAGCGCTACATTCCCTTCCCCATTGACGAGGTGGTCCTGGACTTCGCCCCCCTGACCCCCCTCTCCG
AGGTGCAGGAGGGGGAGCAGGTCCAGGTGATGGTGGCGGCGGCGCGGCAGGAGGCGGTGGCGGGGGTCCTCGAGGCCCTG
AGGGGGGCGGGGCTCGTCCCCGTGGTGCTGGACGTGAAGCCCTTCGCCGGGCTTTACCCTCTGGAGGCCAGGCTTGCGGA
GGAGCCCGACCGGGTCTTCCTCGTCCTGGACATCGGGGCCGAGAGCACGAGCCTCGTCCTGCTCCGGGGGGACAAGCCCC
TGGCGGTGCGCGTCCTCACGCTCTCGGGCAAGGACTTCACCGAGGCCATCGCCCGAAGCTTCAACCTGGACCTCCTCGCC
GCCGAGGAGGTGAAGCGGACCTACGGGATGGCCACCCTCCCCACCGAGGACGAGGAGCTCCTCCTGGACTTTGACGCCGA
GCGGGAGCGCTACAGCCCGGGGCGCATCTACGACGCCATCCGCCCGGTGCTGGTGGAGCTCACCCAGGAGCTCCGCCGCA
GCCTGGAGTTCTTCCGCATCCAGCTGGAGGAGGCCTCGCCCGAGGTGGGCTACCTCCTGGGCGGGGGGAGCAAGCTCAGG
GGGCTCGCCTCCCTCCTCACCGACACCCTGGGGGTGAACTTTGAGCCCGTCAACCCCTGGGAGGCGGTGGCGGTGGACCC
CAAGCGCTTTGAGGCGGAACACCTCCAGGAGATGGGGCCGGAGTTCGCCGTGGCCCTGGGCTTGGCGTTGAGGGGGGTGG
AGCCCCTTGATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilM | Thermus thermophilus HB27 |
98.939 |
100 |
0.989 |