Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QDW62_RS17040 Genome accession   NZ_CP122634
Coordinates   3361383..3362012 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain ETEC4085     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3356383..3367012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW62_RS17025 (QDW62_17025) helD 3356625..3358679 (-) 2055 WP_236294995.1 DNA helicase IV -
  QDW62_RS17030 (QDW62_17030) yccF 3358802..3359248 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QDW62_RS17035 (QDW62_17035) yccS 3359258..3361420 (+) 2163 WP_000875061.1 YccS family putative transporter -
  QDW62_RS17040 (QDW62_17040) sxy/tfoX 3361383..3362012 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QDW62_RS17045 (QDW62_17045) sulA 3362231..3362740 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  QDW62_RS17050 (QDW62_17050) ompA 3363097..3364149 (+) 1053 WP_282837123.1 porin OmpA -
  QDW62_RS17055 (QDW62_17055) matP 3364225..3364677 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QDW62_RS17060 (QDW62_17060) ycbZ 3364863..3366623 (+) 1761 WP_000156512.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=741706 QDW62_RS17040 WP_000839153.1 3361383..3362012(-) (sxy/tfoX) [Escherichia coli strain ETEC4085]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=741706 QDW62_RS17040 WP_000839153.1 3361383..3362012(-) (sxy/tfoX) [Escherichia coli strain ETEC4085]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1