Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QDW62_RS02025 Genome accession   NZ_CP122634
Coordinates   433039..433716 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain ETEC4085     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 428039..438716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW62_RS02010 (QDW62_02010) chiA 429406..432099 (+) 2694 WP_236295046.1 bifunctional chitinase/lysozyme -
  QDW62_RS02015 (QDW62_02015) bfd 432268..432462 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  QDW62_RS02020 (QDW62_02020) bfr 432534..433010 (+) 477 WP_000675504.1 bacterioferritin -
  QDW62_RS02025 (QDW62_02025) pilD 433039..433716 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  QDW62_RS02030 (QDW62_02030) gspM 433716..434177 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  QDW62_RS02035 (QDW62_02035) gspL 434174..435337 (-) 1164 WP_001115238.1 type II secretion system protein GspL -
  QDW62_RS02040 (QDW62_02040) gspK 435352..436335 (-) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  QDW62_RS02045 (QDW62_02045) gspJ 436328..436915 (-) 588 WP_282838284.1 type II secretion system minor pseudopilin GspJ -
  QDW62_RS02050 (QDW62_02050) gspI 436908..437285 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  QDW62_RS02055 (QDW62_02055) gspH 437282..437791 (-) 510 WP_001076044.1 type II secretion system minor pseudopilin GspH -
  QDW62_RS02060 (QDW62_02060) gspG 437799..438236 (-) 438 WP_001202873.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=741666 QDW62_RS02025 WP_000178161.1 433039..433716(-) (pilD) [Escherichia coli strain ETEC4085]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=741666 QDW62_RS02025 WP_000178161.1 433039..433716(-) (pilD) [Escherichia coli strain ETEC4085]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378