Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QDW58_RS18055 Genome accession   NZ_CP122629
Coordinates   3683904..3684509 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ETEC4088     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3678904..3689509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW58_RS18035 (QDW58_18035) aes 3678941..3679900 (+) 960 WP_000801846.1 acetyl esterase -
  QDW58_RS18040 (QDW58_18040) hemH 3679897..3680859 (-) 963 WP_001250088.1 ferrochelatase -
  QDW58_RS18045 (QDW58_18045) adk 3681095..3681739 (-) 645 WP_001347617.1 adenylate kinase -
  QDW58_RS18050 (QDW58_18050) htpG 3681920..3683794 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QDW58_RS18055 (QDW58_18055) recR 3683904..3684509 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QDW58_RS18060 (QDW58_18060) ybaB 3684509..3684838 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QDW58_RS18065 (QDW58_18065) dnaX 3684891..3686822 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QDW58_RS18070 (QDW58_18070) apt 3686951..3687502 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QDW58_RS18075 (QDW58_18075) ybaN 3687655..3688032 (-) 378 WP_001188901.1 DUF454 family protein -
  QDW58_RS18080 (QDW58_18080) priC 3688102..3688629 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  QDW58_RS18085 (QDW58_18085) rsmS 3688643..3688804 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=741629 QDW58_RS18055 WP_001195025.1 3683904..3684509(-) (recR) [Escherichia coli strain ETEC4088]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=741629 QDW58_RS18055 WP_001195025.1 3683904..3684509(-) (recR) [Escherichia coli strain ETEC4088]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACTCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443