Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QDW58_RS15505 Genome accession   NZ_CP122629
Coordinates   3143156..3143785 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain ETEC4088     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3138156..3148785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW58_RS15490 (QDW58_15490) helD 3138398..3140452 (-) 2055 WP_000420533.1 DNA helicase IV -
  QDW58_RS15495 (QDW58_15495) yccF 3140575..3141021 (+) 447 WP_001261231.1 YccF domain-containing protein -
  QDW58_RS15500 (QDW58_15500) yccS 3141031..3143193 (+) 2163 WP_000875020.1 YccS family putative transporter -
  QDW58_RS15505 (QDW58_15505) sxy/tfoX 3143156..3143785 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QDW58_RS15510 (QDW58_15510) sulA 3144004..3144513 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QDW58_RS15515 (QDW58_15515) ompA 3144870..3145910 (+) 1041 WP_000750416.1 porin OmpA -
  QDW58_RS15520 (QDW58_15520) matP 3145986..3146438 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QDW58_RS15525 (QDW58_15525) ycbZ 3146624..3148384 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=741622 QDW58_RS15505 WP_000839153.1 3143156..3143785(-) (sxy/tfoX) [Escherichia coli strain ETEC4088]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=741622 QDW58_RS15505 WP_000839153.1 3143156..3143785(-) (sxy/tfoX) [Escherichia coli strain ETEC4088]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1