Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   TthHC11_RS00085 Genome accession   NZ_AP019801
Coordinates   17747..18832 (-) Length   361 a.a.
NCBI ID   WP_143590144.1    Uniprot ID   -
Organism   Thermus thermophilus strain HC11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 12747..23832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TthHC11_RS00070 (TthHC11_00120) - 14691..15323 (-) 633 WP_008634004.1 histidine phosphatase family protein -
  TthHC11_RS00075 (TthHC11_00130) purM 15320..16321 (-) 1002 WP_143590140.1 phosphoribosylformylglycinamidine cyclo-ligase -
  TthHC11_RS00080 (TthHC11_00140) gatB 16327..17736 (-) 1410 WP_143590142.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  TthHC11_RS00085 (TthHC11_00150) pilT 17747..18832 (-) 1086 WP_143590144.1 type IV pilus twitching motility protein PilT Machinery gene
  TthHC11_RS00090 (TthHC11_00160) pilF 18845..21514 (-) 2670 WP_143590146.1 type IV pilus assembly ATPase PilB Machinery gene
  TthHC11_RS00095 (TthHC11_00170) - 21511..21996 (-) 486 WP_011173992.1 YqeG family HAD IIIA-type phosphatase -
  TthHC11_RS00100 (TthHC11_00180) pgeF 22031..22759 (-) 729 WP_143590148.1 peptidoglycan editing factor PgeF -
  TthHC11_RS00105 (TthHC11_00190) surE 22756..23511 (-) 756 WP_011173994.1 5'/3'-nucleotidase SurE -
  TthHC11_RS00110 (TthHC11_00200) - 23570..23776 (-) 207 WP_011173995.1 cold-shock protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 39976.31 Da        Isoelectric Point: 7.5114

>NTDB_id=74155 TthHC11_RS00085 WP_143590144.1 17747..18832(-) (pilT) [Thermus thermophilus strain HC11]
MAKAPDVVDLLALAVERGASDLVITVGLPPMLKIDGEFHPTEYEPLTPQETRRLMYALMDEKQQRIFEEEKELDFSFSLP
GKGRYRVNVFLQRGSVGGVLRVVPSVVKSFEELGLPKNIAEIAMSPRGLVLVTGPTGSGKSTTLASMIDYINERKACHIV
TIEDPIEFFHKHKRAIVNQREIGSDTKSFHKALRSVLRQAPDVILVGEMRDYETIAAAITAAETGHLVMGTLHTNSAPET
IDRIVDVFPENQQEQVRVQLSNNLVAVLTQQLLPKAFGGGRVLAYELMIATPAVRALIREGKTHQLRSVIQTGGQYGMIT
MDACLADLYRRKLITYEMGLARAVDPKEFMRLAGAPEGARR

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=74155 TthHC11_RS00085 WP_143590144.1 17747..18832(-) (pilT) [Thermus thermophilus strain HC11]
ATGGCCAAAGCCCCAGACGTGGTGGACCTTTTGGCGCTCGCGGTGGAGCGGGGGGCGAGCGACCTGGTGATCACCGTGGG
CCTCCCCCCCATGCTGAAGATCGACGGGGAGTTCCACCCCACGGAGTACGAGCCCCTCACCCCCCAGGAGACCCGCCGCC
TCATGTACGCCCTCATGGACGAGAAGCAGCAGCGGATCTTTGAGGAGGAGAAGGAGCTGGACTTCTCCTTCAGCCTCCCC
GGGAAGGGGCGGTACCGGGTCAACGTCTTCCTGCAAAGGGGAAGCGTGGGGGGGGTCCTAAGGGTCGTGCCGAGCGTCGT
GAAGAGCTTTGAGGAGCTCGGCCTCCCCAAGAACATCGCCGAGATCGCCATGAGCCCAAGGGGCCTCGTCCTGGTCACGG
GGCCCACAGGGTCCGGCAAGAGCACCACCCTGGCCTCCATGATTGACTACATCAACGAACGCAAGGCCTGCCACATCGTC
ACCATTGAGGACCCCATAGAGTTCTTCCACAAGCACAAGCGGGCCATCGTGAACCAACGGGAGATCGGCTCCGACACCAA
GAGCTTCCACAAGGCGCTCCGCAGCGTCCTCCGCCAGGCCCCGGACGTGATCCTCGTGGGGGAGATGCGGGACTACGAGA
CCATCGCCGCCGCCATCACCGCCGCCGAGACGGGGCACCTGGTCATGGGCACCCTCCACACCAACTCCGCCCCGGAGACC
ATAGACCGCATCGTGGACGTCTTCCCGGAAAACCAGCAGGAACAGGTCCGGGTGCAGCTCTCCAACAACCTGGTGGCCGT
CCTCACGCAACAGCTCCTGCCCAAGGCCTTTGGCGGCGGGCGGGTCCTGGCCTACGAGCTCATGATCGCTACCCCAGCCG
TGAGGGCCCTCATCCGGGAGGGGAAGACCCACCAGTTAAGGAGCGTGATCCAGACGGGCGGCCAGTACGGGATGATCACC
ATGGACGCCTGCCTCGCCGACCTCTACCGGCGCAAGCTCATCACCTACGAGATGGGGCTCGCCAGGGCCGTGGACCCCAA
GGAGTTCATGAGGCTCGCGGGCGCGCCCGAGGGCGCCAGGCGGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(34-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

68.272

97.784

0.668
  pilT Pseudomonas aeruginosa PAK

54.07

95.291

0.515
  pilT Pseudomonas stutzeri DSM 10701

53.779

95.291

0.512
  pilT Acinetobacter baylyi ADP1

53.779

95.291

0.512
  pilT Acinetobacter baumannii strain A118

52.754

95.568

0.504
  pilT Acinetobacter nosocomialis M2

52.754

95.568

0.504
  pilT Acinetobacter baumannii D1279779

52.754

95.568

0.504
  pilT Neisseria meningitidis 8013

52.663

93.629

0.493
  pilT Neisseria gonorrhoeae MS11

51.929

93.352

0.485
  pilT Legionella pneumophila strain ERS1305867

50.581

95.291

0.482
  pilT Legionella pneumophila strain Lp02

50.581

95.291

0.482
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

51.976

91.136

0.474
  pilT Vibrio cholerae strain A1552

51.976

91.136

0.474
  pilU Pseudomonas stutzeri DSM 10701

46.647

95.014

0.443
  pilU Acinetobacter baylyi ADP1

42.899

95.568

0.41
  pilU Vibrio cholerae strain A1552

45.484

85.873

0.391

Multiple sequence alignment