Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OIO62_RS01550 Genome accession   NZ_CP107616
Coordinates   325987..326514 (+) Length   175 a.a.
NCBI ID   WP_000695069.1    Uniprot ID   A0A009IQZ1
Organism   Acinetobacter baumannii strain 1326932     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 320987..331514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO62_RS01535 (OIO62_01535) pilM 323540..324598 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  OIO62_RS01540 (OIO62_01540) pilN 324598..325239 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  OIO62_RS01545 (OIO62_01545) pilO 325236..325976 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  OIO62_RS01550 (OIO62_01550) pilP 325987..326514 (+) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  OIO62_RS01555 (OIO62_01555) pilQ 326577..328742 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  OIO62_RS01560 (OIO62_01560) aroK 328754..329323 (+) 570 WP_000643712.1 shikimate kinase AroK -
  OIO62_RS01565 (OIO62_01565) aroB 329352..330434 (+) 1083 WP_001194249.1 3-dehydroquinate synthase -
  OIO62_RS01570 (OIO62_01570) - 330450..331325 (+) 876 WP_000218799.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19449.66 Da        Isoelectric Point: 8.9898

>NTDB_id=741529 OIO62_RS01550 WP_000695069.1 325987..326514(+) (pilP) [Acinetobacter baumannii strain 1326932]
MKIKQITLYVLACTVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=741529 OIO62_RS01550 WP_000695069.1 325987..326514(+) (pilP) [Acinetobacter baumannii strain 1326932]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTACTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009IQZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714