Detailed information NTG0741355

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDW52_RS04990
• Genome accession: NZ_CP122617
• Coordinates: 1029585..1030577 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ETEC4091
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1024585..1035577

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDW52_RS04960 (QDW52_04960)	ispD	1024646..1025356 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDW52_RS04965 (QDW52_04965)	ispF	1025356..1025835 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDW52_RS04970 (QDW52_04970)	truD	1025832..1026881 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QDW52_RS04975 (QDW52_04975)	surE	1026862..1027623 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDW52_RS04980 (QDW52_04980)	pcm	1027617..1028243 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDW52_RS04985 (QDW52_04985)	nlpD	1028428..1029522 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QDW52_RS04990 (QDW52_04990)	rpoS	1029585..1030577 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QDW52_RS04995 (QDW52_04995)	-	1030698..1031105 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
QDW52_RS05000 (QDW52_05000)	-	1031252..1031845 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QDW52_RS05005 (QDW52_05005)	-	1031845..1033272 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QDW52_RS05010 (QDW52_05010)	-	1033283..1033519 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QDW52_RS05015 (QDW52_05015)	ygbN	1033558..1034922 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=741355 QDW52_RS04990 WP_000081550.1 1029585..1030577(+) (rpoS) [Escherichia coli strain ETEC4091]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=741355 QDW52_RS04990 WP_000081550.1 1029585..1030577(+) (rpoS) [Escherichia coli strain ETEC4091]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715