Detailed information NTG0074134

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VroAM7_RS13610
• Genome accession: NZ_AP019798
• Coordinates: 2914618..2915604 (-)
• Length: 328 a.a.
• NCBI ID: WP_010450244.1
• Uniprot ID: A0A2K7SP11
• Organism: Vibrio rotiferianus strain AM7
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2909618..2920604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VroAM7_RS13595 (VroAM7_25550)	recA	2910156..2911199 (-)	1044	WP_010450238.1	recombinase RecA	Machinery gene
VroAM7_RS13600 (VroAM7_25560)	pncC	2911400..2911882 (-)	483	WP_143692967.1	nicotinamide-nucleotide amidase	-
VroAM7_RS13605 (VroAM7_25570)	mutS	2911968..2914529 (+)	2562	WP_143692968.1	DNA mismatch repair protein MutS	-
VroAM7_RS13610 (VroAM7_25580)	rpoS	2914618..2915604 (-)	987	WP_010450244.1	RNA polymerase sigma factor RpoS	Regulator
VroAM7_RS13615 (VroAM7_25590)	nlpD	2915685..2916596 (-)	912	WP_143692969.1	murein hydrolase activator NlpD	-
VroAM7_RS13620 (VroAM7_25600)	-	2916611..2917237 (-)	627	WP_010450248.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VroAM7_RS13625 (VroAM7_25610)	surE	2917237..2918013 (-)	777	WP_071235295.1	5'/3'-nucleotidase SurE	-
VroAM7_RS13630 (VroAM7_25620)	truD	2918013..2919056 (-)	1044	WP_143692970.1	tRNA pseudouridine(13) synthase TruD	-
VroAM7_RS13635 (VroAM7_25630)	ispF	2919102..2919578 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VroAM7_RS13640 (VroAM7_25640)	ispD	2919593..2920303 (-)	711	WP_138942816.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VroAM7_RS13645 (VroAM7_25650)	ftsB	2920305..2920586 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37560.57 Da
• Isoelectric Point: 4.8400

>NTDB_id=74134 VroAM7_RS13610 WP_010450244.1 2914618..2915604(-) (rpoS) [Vibrio rotiferianus strain AM7]
MSISNTVTKVEEFDYDDAAVGRINNELVKSPSKKEKSSQREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=74134 VroAM7_RS13610 WP_010450244.1 2914618..2915604(-) (rpoS) [Vibrio rotiferianus strain AM7]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGATTATGACGATGCAGCAGTAGGCCGTATTAATAACGAACT
TGTAAAATCACCATCCAAAAAAGAGAAGAGCTCGCAAAGAGAGGAATTCGATGCGAGTAATAAGAGCTTAGATGCAACAC
AGCTTTATCTAGGTGAAATTGGCTTCTCACCTCTACTCACAGCAGAAGAAGAAGTACTTTATGCTCGACGTGCATTGCGT
GGCGATGAAGCTGCTCGTAAACGTATGATCGAAAGTAACTTGCGTCTGGTCGTGAAGATCTCTCGCCGCTACAGCAATCG
TGGTCTTGCACTTCTTGATCTCATCGAAGAAGGCAACCTAGGTTTGATCCGAGCGGTAGAGAAATTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCAACGTGGTGGATCCGCCAAACGATCGAGCGTGCGTTGATGAACCAAACTCGTACCATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACCGCGCGTGAACTTTCTCAGAAGCTCGATCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGCTAGATATCCCGGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTA
TTAGTTCTGTTGATACACCAATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATCATTCCTGATGCCAACAATTCAGAT
CCTGAAGTTTCCACTCAGGACGACGACATTAAATCTTCATTGATCCATTGGTTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTTGCACGTCGGTTTGGTCTGCTTGGTTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAAGTGGAAGGCTTACGTCGACTACGTGAGATCTTGATTAAACAAGGTCTGAACATGGAA
AACTTGTTCAACGTAGAAGATGATTAG

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2K7SP11

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.226	100	0.863