Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OIO60_RS01625 Genome accession   NZ_CP107605
Coordinates   341429..341956 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain 1326924-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336429..346956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO60_RS01610 (OIO60_01610) pilM 338982..340040 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  OIO60_RS01615 (OIO60_01615) pilN 340040..340681 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  OIO60_RS01620 (OIO60_01620) pilO 340678..341418 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  OIO60_RS01625 (OIO60_01625) pilP 341429..341956 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  OIO60_RS01630 (OIO60_01630) pilQ 342024..344189 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  OIO60_RS01635 (OIO60_01635) aroK 344201..344770 (+) 570 WP_000643712.1 shikimate kinase AroK -
  OIO60_RS01640 (OIO60_01640) aroB 344799..345881 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  OIO60_RS01645 (OIO60_01645) - 345897..346772 (+) 876 WP_000218802.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=741327 OIO60_RS01625 WP_000695065.1 341429..341956(+) (pilP) [Acinetobacter baumannii strain 1326924-1]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=741327 OIO60_RS01625 WP_000695065.1 341429..341956(+) (pilP) [Acinetobacter baumannii strain 1326924-1]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714