Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VroAM7_RS13480 Genome accession   NZ_AP019798
Coordinates   2892367..2892885 (-) Length   172 a.a.
NCBI ID   WP_010450211.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain AM7     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2887367..2897885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VroAM7_RS13455 (VroAM7_25360) rimM 2887426..2887974 (-) 549 WP_005438038.1 ribosome maturation factor RimM -
  VroAM7_RS13460 (VroAM7_25370) rpsP 2888004..2888252 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  VroAM7_RS13465 (VroAM7_25380) ffh 2888463..2889845 (-) 1383 WP_005446242.1 signal recognition particle protein -
  VroAM7_RS13470 (VroAM7_25400) - 2890060..2890854 (+) 795 WP_010450206.1 inner membrane protein YpjD -
  VroAM7_RS13475 (VroAM7_25410) - 2891010..2892284 (+) 1275 WP_010450209.1 HlyC/CorC family transporter -
  VroAM7_RS13480 (VroAM7_25420) luxS 2892367..2892885 (-) 519 WP_010450211.1 S-ribosylhomocysteine lyase Regulator
  VroAM7_RS13485 (VroAM7_25430) - 2892963..2893526 (-) 564 WP_010450213.1 hypothetical protein -
  VroAM7_RS13490 (VroAM7_25440) gshA 2893588..2895156 (-) 1569 WP_143692964.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19096.88 Da        Isoelectric Point: 4.8711

>NTDB_id=74131 VroAM7_RS13480 WP_010450211.1 2892367..2892885(-) (luxS) [Vibrio rotiferianus strain AM7]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGESVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=74131 VroAM7_RS13480 WP_010450211.1 2892367..2892885(-) (luxS) [Vibrio rotiferianus strain AM7]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCACCAGCAGTTCGTGTGGCGAAAACGATGCAAAC
TCCAAAAGGAGATACCATCACGGTCTTCGATCTGCGCTTCACCGCACCAAACAAAGACATCCTTTCTGAGAAGGGGATCC
ACACTCTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGAGAGCGTTGAGATCATTGATATTTCACCA
ATGGGTTGCCGTACCGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAGGATGTATTGAAAGTGGAAAGTCAAAACAAGATCCCTGAGCTGAATGAGTACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCAAAGAACATTCTAGAAGCGGGCGTGGCGGTAAATAAGAATGATGAATTGGCA
TTGCCAGAGTCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment