Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   OIO71_RS09870 Genome accession   NZ_CP107603
Coordinates   2082167..2082547 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326595     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2077167..2087547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO71_RS09840 (OIO71_09840) tadA 2077286..2077789 (-) 504 WP_031960449.1 tRNA adenosine(34) deaminase TadA -
  OIO71_RS09845 (OIO71_09845) - 2077796..2078920 (-) 1125 WP_109067466.1 enoyl-CoA hydratase/isomerase family protein -
  OIO71_RS09850 (OIO71_09850) ung 2078917..2079630 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  OIO71_RS09855 (OIO71_09855) - 2079681..2080277 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  OIO71_RS09860 (OIO71_09860) gspK 2080507..2081466 (-) 960 WP_031960447.1 type II secretion system minor pseudopilin GspK -
  OIO71_RS09865 (OIO71_09865) xcpW 2081466..2082167 (-) 702 WP_000594580.1 type II secretion system minor pseudopilin GspJ Machinery gene
  OIO71_RS09870 (OIO71_09870) xcpV 2082167..2082547 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  OIO71_RS09875 (OIO71_09875) - 2082537..2083091 (-) 555 WP_000841367.1 type II secretion system protein -
  OIO71_RS09880 (OIO71_09880) - 2083101..2083709 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  OIO71_RS09885 (OIO71_09885) - 2083747..2084520 (-) 774 WP_000497298.1 TatD family hydrolase -
  OIO71_RS09890 (OIO71_09890) - 2084538..2084879 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  OIO71_RS09895 (OIO71_09895) - 2084891..2085871 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  OIO71_RS09900 (OIO71_09900) kdsB 2085883..2086644 (-) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=741299 OIO71_RS09870 WP_000836911.1 2082167..2082547(-) (xcpV) [Acinetobacter baumannii strain 1326595]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=741299 OIO71_RS09870 WP_000836911.1 2082167..2082547(-) (xcpV) [Acinetobacter baumannii strain 1326595]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1