Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   OIO85_RS18165 Genome accession   NZ_CP107601
Coordinates   3772297..3773451 (+) Length   384 a.a.
NCBI ID   WP_000755282.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326589     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3767297..3778451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO85_RS18140 (OIO85_18145) - 3767448..3768662 (+) 1215 WP_001177953.1 oxygenase MpaB family protein -
  OIO85_RS18145 (OIO85_18150) - 3768732..3768938 (-) 207 WP_000182542.1 hypothetical protein -
  OIO85_RS18150 (OIO85_18155) - 3768992..3771106 (-) 2115 WP_031959493.1 TonB-dependent copper receptor -
  OIO85_RS18155 (OIO85_18160) - 3771179..3771607 (-) 429 WP_000231981.1 DUF2946 family protein -
  OIO85_RS18160 (OIO85_18165) def 3771644..3772174 (-) 531 WP_001196539.1 peptide deformylase -
  OIO85_RS18165 (OIO85_18170) tsaP 3772297..3773451 (+) 1155 WP_000755282.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OIO85_RS18170 (OIO85_18175) dprA 3773472..3774602 (+) 1131 WP_031959491.1 DNA-processing protein DprA Machinery gene
  OIO85_RS18175 (OIO85_18180) - 3774653..3775222 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  OIO85_RS18180 (OIO85_18185) - 3775614..3776534 (-) 921 WP_000084546.1 DMT family transporter -
  OIO85_RS18185 (OIO85_18190) - 3776640..3777293 (-) 654 WP_109067430.1 TetR/AcrR family transcriptional regulator -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42336.25 Da        Isoelectric Point: 8.5816

>NTDB_id=741280 OIO85_RS18165 WP_000755282.1 3772297..3773451(+) (tsaP) [Acinetobacter baumannii strain 1326589]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGVQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=741280 OIO85_RS18165 WP_000755282.1 3772297..3773451(+) (tsaP) [Acinetobacter baumannii strain 1326589]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAATCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTAGGTATTATTCGCCGCTACACTGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACCATTTACGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCCGTTTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACAGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAGGGCGTTCAAGTAGGCCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.219

100

0.992