Detailed information NTG0741275

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OIO85_RS17330
• Genome accession: NZ_CP107601
• Coordinates: 3602326..3603186 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152273.1
• Uniprot ID: A0A836M4G0
• Organism: Acinetobacter baumannii strain 1326589
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3597326..3608186

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OIO85_RS17310 (OIO85_17315)	secG	3597931..3598260 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
OIO85_RS17315 (OIO85_17320)	tpiA	3598273..3599067 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
OIO85_RS17320 (OIO85_17325)	pilB	3599358..3601070 (+)	1713	WP_264229123.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OIO85_RS17325 (OIO85_17330)	pilC	3601100..3602326 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
OIO85_RS17330 (OIO85_17335)	pilD	3602326..3603186 (+)	861	WP_001152273.1	A24 family peptidase	Machinery gene
OIO85_RS17335 (OIO85_17340)	coaE	3603188..3603784 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
OIO85_RS17340 (OIO85_17345)	-	3603781..3604695 (-)	915	WP_000075014.1	DMT family transporter	-
OIO85_RS17345 (OIO85_17350)	rlmB	3604731..3605480 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
OIO85_RS17350 (OIO85_17355)	-	3605582..3605908 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
OIO85_RS17355 (OIO85_17360)	-	3605985..3607295 (-)	1311	WP_031959605.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32088.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=741275 OIO85_RS17330 WP_001152273.1 3602326..3603186(+) (pilD) [Acinetobacter baumannii strain 1326589]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=741275 OIO85_RS17330 WP_001152273.1 3602326..3603186(+) (pilD) [Acinetobacter baumannii strain 1326589]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A836M4G0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441