Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   OIO43_RS17425 Genome accession   NZ_CP107599
Coordinates   3677162..3678316 (+) Length   384 a.a.
NCBI ID   WP_000755269.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326584     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3672162..3683316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO43_RS17400 (OIO43_17400) - 3672316..3673530 (+) 1215 WP_001177971.1 oxygenase MpaB family protein -
  OIO43_RS17405 (OIO43_17405) - 3673600..3673806 (-) 207 WP_000182542.1 hypothetical protein -
  OIO43_RS17410 (OIO43_17410) - 3673860..3675971 (-) 2112 WP_001120666.1 TonB-dependent copper receptor -
  OIO43_RS17415 (OIO43_17415) - 3676044..3676472 (-) 429 WP_000231982.1 DUF2946 family protein -
  OIO43_RS17420 (OIO43_17420) def 3676509..3677039 (-) 531 WP_001196539.1 peptide deformylase -
  OIO43_RS17425 (OIO43_17425) tsaP 3677162..3678316 (+) 1155 WP_000755269.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OIO43_RS17430 (OIO43_17430) dprA 3678337..3679467 (+) 1131 WP_031956569.1 DNA-processing protein DprA Machinery gene
  OIO43_RS17435 (OIO43_17435) - 3679518..3680087 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  OIO43_RS17440 (OIO43_17440) - 3680479..3681399 (-) 921 WP_094081163.1 DMT family transporter -
  OIO43_RS17445 (OIO43_17445) - 3681505..3682155 (-) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42369.28 Da        Isoelectric Point: 8.8581

>NTDB_id=741241 OIO43_RS17425 WP_000755269.1 3677162..3678316(+) (tsaP) [Acinetobacter baumannii strain 1326584]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPHSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLYGRPLVGKDEGDGCAGIIRRYTGQTTSLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGVQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=741241 OIO43_RS17425 WP_000755269.1 3677162..3678316(+) (tsaP) [Acinetobacter baumannii strain 1326584]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACACTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTATA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGCAGGTATTATTCGCCGCTATACAGGTCAAACCACAAGCC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGATTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACCATTTACGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCCGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTTCGTCGTGGTGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAAGGCGTTCAAGTAGGCCAA
GTTTTTGATATTACCCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.438

100

0.984