Detailed information NTG0741236

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OIO43_RS16575
• Genome accession: NZ_CP107599
• Coordinates: 3506139..3506999 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152270.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain 1326584
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3501139..3511999

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OIO43_RS16555 (OIO43_16555)	secG	3501744..3502073 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
OIO43_RS16560 (OIO43_16560)	tpiA	3502086..3502880 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
OIO43_RS16565 (OIO43_16565)	pilB	3503171..3504883 (+)	1713	WP_001274991.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OIO43_RS16570 (OIO43_16570)	pilC	3504913..3506139 (+)	1227	WP_000279215.1	type II secretion system F family protein	Machinery gene
OIO43_RS16575 (OIO43_16575)	pilD	3506139..3506999 (+)	861	WP_001152270.1	A24 family peptidase	Machinery gene
OIO43_RS16580 (OIO43_16580)	coaE	3507001..3507597 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
OIO43_RS16585 (OIO43_16585)	-	3507594..3508508 (-)	915	WP_000075014.1	DMT family transporter	-
OIO43_RS16590 (OIO43_16590)	rlmB	3508544..3509293 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
OIO43_RS16595 (OIO43_16595)	-	3509395..3509721 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
OIO43_RS16600 (OIO43_16600)	-	3509798..3511108 (-)	1311	WP_000753290.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32134.61 Da
• Isoelectric Point: 7.1041

>NTDB_id=741236 OIO43_RS16575 WP_001152270.1 3506139..3506999(+) (pilD) [Acinetobacter baumannii strain 1326584]
MQDIIAYFIQNLTALYIAVALMSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLIVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=741236 OIO43_RS16575 WP_001152270.1 3506139..3506999(+) (pilD) [Acinetobacter baumannii strain 1326584]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCATGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAATAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441