Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OIO43_RS16570 Genome accession   NZ_CP107599
Coordinates   3504913..3506139 (+) Length   408 a.a.
NCBI ID   WP_000279215.1    Uniprot ID   A0A0H5FGB3
Organism   Acinetobacter baumannii strain 1326584     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3499913..3511139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO43_RS16535 (OIO43_16535) rimP 3500578..3501102 (-) 525 WP_000777730.1 ribosome maturation factor RimP -
  OIO43_RS16555 (OIO43_16555) secG 3501744..3502073 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  OIO43_RS16560 (OIO43_16560) tpiA 3502086..3502880 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  OIO43_RS16565 (OIO43_16565) pilB 3503171..3504883 (+) 1713 WP_001274991.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OIO43_RS16570 (OIO43_16570) pilC 3504913..3506139 (+) 1227 WP_000279215.1 type II secretion system F family protein Machinery gene
  OIO43_RS16575 (OIO43_16575) pilD 3506139..3506999 (+) 861 WP_001152270.1 A24 family peptidase Machinery gene
  OIO43_RS16580 (OIO43_16580) coaE 3507001..3507597 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  OIO43_RS16585 (OIO43_16585) - 3507594..3508508 (-) 915 WP_000075014.1 DMT family transporter -
  OIO43_RS16590 (OIO43_16590) rlmB 3508544..3509293 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OIO43_RS16595 (OIO43_16595) - 3509395..3509721 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  OIO43_RS16600 (OIO43_16600) - 3509798..3511108 (-) 1311 WP_000753290.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44950.46 Da        Isoelectric Point: 9.9566

>NTDB_id=741235 OIO43_RS16570 WP_000279215.1 3504913..3506139(+) (pilC) [Acinetobacter baumannii strain 1326584]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRISNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=741235 OIO43_RS16570 WP_000279215.1 3504913..3506139(+) (pilC) [Acinetobacter baumannii strain 1326584]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAGGGAGA
ACTTCCAGCTAAAAACATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAAATATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTAGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCAGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAATCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTGGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGACGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAGGCAATCATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGATCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTGGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACCTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGTGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H5FGB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

100

100

1
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria meningitidis 44/76-A

47.236

97.549

0.461
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36