Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   QDX83_RS21730 Genome accession   NZ_CP122600
Coordinates   4404027..4404503 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain ETEC6333     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4399027..4409503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDX83_RS21705 (QDX83_21705) nanC 4400144..4400860 (+) 717 WP_001360088.1 N-acetylneuraminic acid outer membrane channel NanC -
  QDX83_RS21710 (QDX83_21710) nanM 4400880..4401986 (+) 1107 WP_001353974.1 N-acetylneuraminate epimerase -
  QDX83_RS21715 (QDX83_21715) nanS 4402051..4403031 (+) 981 WP_001295601.1 sialate O-acetylesterase -
  QDX83_RS21720 (QDX83_21720) - 4403039..4403689 (-) 651 WP_001037966.1 HNH endonuclease -
  QDX83_RS21725 (QDX83_21725) - 4403826..4403969 (+) 144 Protein_4258 restriction endonuclease -
  QDX83_RS21730 (QDX83_21730) radC 4404027..4404503 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  QDX83_RS21735 (QDX83_21735) - 4404519..4405004 (-) 486 WP_000849588.1 antirestriction protein -
  QDX83_RS21740 (QDX83_21740) - 4405059..4405877 (-) 819 WP_001234620.1 DUF932 domain-containing protein -
  QDX83_RS21745 (QDX83_21745) - 4405977..4406210 (-) 234 WP_001119729.1 DUF905 family protein -
  QDX83_RS21750 (QDX83_21750) - 4406286..4406699 (+) 414 Protein_4263 transposase -
  QDX83_RS21755 (QDX83_21755) - 4406938..4408296 (-) 1359 WP_000823243.1 esterase-like activity of phytase family protein -
  QDX83_RS21760 (QDX83_21760) - 4408578..4408709 (+) 132 Protein_4265 IS3 family transposase -
  QDX83_RS21765 (QDX83_21765) - 4408768..4408860 (-) 93 WP_225115267.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=741235 QDX83_RS21730 WP_001186774.1 4404027..4404503(-) (radC) [Escherichia coli strain ETEC6333]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=741235 QDX83_RS21730 WP_001186774.1 4404027..4404503(-) (radC) [Escherichia coli strain ETEC6333]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399