Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   OIO43_RS10215 Genome accession   NZ_CP107599
Coordinates   2160127..2160507 (-) Length   126 a.a.
NCBI ID   WP_000836907.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326584     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2155127..2165507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO43_RS10185 (OIO43_10185) tadA 2155246..2155749 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  OIO43_RS10190 (OIO43_10190) - 2155756..2156880 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  OIO43_RS10195 (OIO43_10195) ung 2156877..2157590 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  OIO43_RS10200 (OIO43_10200) - 2157641..2158237 (-) 597 WP_000908452.1 6-carboxytetrahydropterin synthase -
  OIO43_RS10205 (OIO43_10205) gspK 2158467..2159426 (-) 960 WP_000301460.1 type II secretion system minor pseudopilin GspK -
  OIO43_RS10210 (OIO43_10210) xcpW 2159426..2160127 (-) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  OIO43_RS10215 (OIO43_10215) xcpV 2160127..2160507 (-) 381 WP_000836907.1 type II secretion system minor pseudopilin GspI Machinery gene
  OIO43_RS10220 (OIO43_10220) - 2160497..2161051 (-) 555 WP_000841373.1 type II secretion system protein -
  OIO43_RS10225 (OIO43_10225) - 2161061..2161669 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  OIO43_RS10230 (OIO43_10230) - 2161707..2162480 (-) 774 WP_000497298.1 TatD family hydrolase -
  OIO43_RS10235 (OIO43_10235) - 2162498..2162839 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  OIO43_RS10240 (OIO43_10240) - 2162851..2163831 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  OIO43_RS10245 (OIO43_10245) kdsB 2163843..2164604 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13989.27 Da        Isoelectric Point: 10.0060

>NTDB_id=741221 OIO43_RS10215 WP_000836907.1 2160127..2160507(-) (xcpV) [Acinetobacter baumannii strain 1326584]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEIKQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=741221 OIO43_RS10215 WP_000836907.1 2160127..2160507(-) (xcpV) [Acinetobacter baumannii strain 1326584]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAAACAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992