Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QDX83_RS15700 Genome accession   NZ_CP122600
Coordinates   3158616..3159245 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain ETEC6333     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3153616..3164245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDX83_RS15685 (QDX83_15685) helD 3153858..3155912 (-) 2055 WP_063085342.1 DNA helicase IV -
  QDX83_RS15690 (QDX83_15690) yccF 3156035..3156481 (+) 447 WP_063085343.1 YccF domain-containing protein -
  QDX83_RS15695 (QDX83_15695) yccS 3156491..3158653 (+) 2163 WP_000875041.1 YccS family putative transporter -
  QDX83_RS15700 (QDX83_15700) sxy/tfoX 3158616..3159245 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QDX83_RS15705 (QDX83_15705) sulA 3159464..3159973 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  QDX83_RS15710 (QDX83_15710) ompA 3160330..3161382 (+) 1053 WP_000750418.1 porin OmpA -
  QDX83_RS15715 (QDX83_15715) matP 3161458..3161910 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QDX83_RS15720 (QDX83_15720) ycbZ 3162096..3163856 (+) 1761 WP_063085344.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=741218 QDX83_RS15700 WP_000839153.1 3158616..3159245(-) (sxy/tfoX) [Escherichia coli strain ETEC6333]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=741218 QDX83_RS15700 WP_000839153.1 3158616..3159245(-) (sxy/tfoX) [Escherichia coli strain ETEC6333]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1