Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VroAM7_RS07500 Genome accession   NZ_AP019798
Coordinates   1631060..1632565 (-) Length   501 a.a.
NCBI ID   WP_138942365.1    Uniprot ID   A0A510I4T9
Organism   Vibrio rotiferianus strain AM7     
Function   promote HapR production (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1623460..1651852 1631060..1632565 within 0


Gene organization within MGE regions


Location: 1623460..1651852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VroAM7_RS07470 (VroAM7_13990) - 1623460..1624578 (-) 1119 WP_138942370.1 glycosyltransferase -
  VroAM7_RS07475 (VroAM7_14000) - 1624657..1626054 (-) 1398 WP_172622540.1 O-antigen ligase family protein -
  VroAM7_RS07480 (VroAM7_14010) - 1626051..1627481 (-) 1431 WP_143692447.1 lipopolysaccharide biosynthesis protein -
  VroAM7_RS07485 - 1627474..1628640 (-) 1167 WP_138942368.1 glycosyltransferase family 4 protein -
  VroAM7_RS07490 (VroAM7_14030) - 1628653..1629837 (-) 1185 WP_143692448.1 glycosyltransferase -
  VroAM7_RS07495 (VroAM7_14040) - 1630033..1631079 (-) 1047 WP_143692449.1 glycosyltransferase family 4 protein -
  VroAM7_RS07500 (VroAM7_14050) luxO 1631060..1632565 (-) 1506 WP_138942365.1 sigma-54-dependent transcriptional regulator Regulator
  VroAM7_RS07505 (VroAM7_14060) - 1632711..1633088 (-) 378 WP_138942364.1 Hpt domain-containing protein -
  VroAM7_RS07510 (VroAM7_14070) - 1633102..1633782 (-) 681 WP_143692450.1 CpsD/CapB family tyrosine-protein kinase -
  VroAM7_RS07515 (VroAM7_14080) - 1633782..1635887 (-) 2106 WP_138942362.1 SLBB domain-containing protein -
  VroAM7_RS07520 (VroAM7_14090) - 1635884..1636717 (-) 834 WP_071235403.1 OmpA family protein -
  VroAM7_RS07525 (VroAM7_14100) - 1636751..1637068 (-) 318 WP_010448144.1 STAS domain-containing protein -
  VroAM7_RS07530 (VroAM7_14110) - 1637451..1638287 (+) 837 WP_138942361.1 DNA ligase -
  VroAM7_RS07535 (VroAM7_14120) - 1638290..1639303 (-) 1014 WP_138942360.1 DUF3080 domain-containing protein -
  VroAM7_RS07540 (VroAM7_14130) - 1639403..1640773 (-) 1371 WP_010448137.1 MATE family efflux transporter -
  VroAM7_RS07545 (VroAM7_14140) - 1641055..1641666 (+) 612 WP_138942359.1 riboflavin synthase subunit alpha -
  VroAM7_RS07550 (VroAM7_14150) - 1641758..1641952 (-) 195 WP_010448133.1 CPXCG motif-containing cysteine-rich protein -
  VroAM7_RS07555 (VroAM7_14160) - 1642218..1643084 (-) 867 WP_010448131.1 fructosamine kinase family protein -
  VroAM7_RS07560 (VroAM7_14170) - 1643309..1644280 (+) 972 WP_010448129.1 response regulator -
  VroAM7_RS07565 (VroAM7_14180) - 1644280..1645254 (+) 975 WP_038884166.1 GGDEF domain-containing protein -
  VroAM7_RS07570 (VroAM7_14190) - 1645381..1645725 (+) 345 WP_010448125.1 DUF3802 family protein -
  VroAM7_RS07575 (VroAM7_14200) - 1645759..1646238 (-) 480 WP_138942358.1 NlpC/P60 family protein -
  VroAM7_RS07580 (VroAM7_14210) - 1646388..1648406 (+) 2019 WP_138942389.1 methyl-accepting chemotaxis protein -
  VroAM7_RS07585 (VroAM7_14220) - 1648706..1651852 (+) 3147 WP_138942357.1 HD domain-containing phosphohydrolase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56306.98 Da        Isoelectric Point: 6.1651

>NTDB_id=74121 VroAM7_RS07500 WP_138942365.1 1631060..1632565(-) (luxO) [Vibrio rotiferianus strain AM7]
MRPKVLLVEDSTSLAILYKQYVKDEPYDIFHVETGKEAKQFIERTKPQLVILDIKLPDMSGEDVLDWINENNIQTSVIIA
TAHGSVNLAVNLIQKGAEDFLEKPINADRLKTSVSLHLKRAKLEHLVENIQATFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTTASVFIVGESGTGKEVCAEAIHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGASREMKVDVRIICATNRDPLEEVEQGRFREDLYYRVHVVPIDMPPLSERGSDI
VTLASHFLNTYAKQDKKKFKSLSKEVQTLFKAYAWPGNVRQLQNIIRNIVVLNNEEQVSLSHLPSQLTAKKRAQTDTTSA
NLGRDSVNHVQQVTPSSDLENIETRPSYIDEPIARTHSNSTPYFNDDGSIRPMWEVEREAIQNAINFCDGNVLNAAVMLE
LSPSTVYRKKQAWEADEAKIE

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=74121 VroAM7_RS07500 WP_138942365.1 1631060..1632565(-) (luxO) [Vibrio rotiferianus strain AM7]
ATGAGACCGAAGGTTTTATTGGTAGAGGATTCAACCTCTCTTGCTATCTTATATAAACAATATGTTAAAGATGAGCCTTA
TGATATTTTCCATGTTGAAACAGGTAAAGAGGCTAAACAGTTTATTGAACGAACTAAACCTCAACTTGTCATCCTGGATA
TTAAGTTGCCCGACATGTCTGGTGAAGACGTCTTAGATTGGATTAACGAGAACAATATTCAAACCTCGGTAATTATTGCA
ACGGCTCATGGCAGCGTAAATTTAGCGGTCAATCTGATTCAAAAGGGAGCAGAAGACTTTTTAGAGAAGCCCATCAATGC
CGATCGCCTCAAAACATCCGTCTCATTGCACCTCAAGCGGGCGAAGCTCGAACATTTAGTTGAAAACATCCAAGCAACTT
TCGATCGACATAACTATCACGGCTTTATCGGTTCTAGCCTACCAATGCAGGCTGTTTACAAAACAATCGATGCGGTAGCC
CCTACTACAGCCAGTGTGTTCATTGTCGGAGAGAGTGGCACGGGTAAAGAAGTTTGTGCAGAAGCTATACATCGTCAAAG
TGATCGTCGTGATAAGCCTTTCATTGCTATCAACTGTGGTGCTATTCCGAGAGACCTCATGGAAAGTGAGATATTTGGTC
ATGTCAAAGGGGCCTTCACCGGAGCAACCACAGACCGAAAAGGAGCGGCCACACTGGCACATGGTGGTACATTGTTTCTG
GATGAACTATGCGAAATGGAGCTAGAAATGCAGAAAAAGCTCCTGCGCTTCTTACAGACAGGAACCTACACACCACTAGG
TGCTAGCAGAGAAATGAAGGTAGACGTGCGCATTATCTGTGCAACAAACCGAGATCCTCTAGAAGAAGTTGAACAAGGAC
GATTTCGTGAAGATTTGTATTATCGTGTACATGTTGTGCCTATCGATATGCCACCGTTATCCGAGAGAGGAAGTGACATA
GTCACACTTGCCAGTCACTTCTTGAACACTTATGCAAAACAAGACAAGAAGAAATTCAAATCGTTAAGTAAAGAGGTTCA
AACTCTTTTCAAAGCGTACGCTTGGCCGGGCAATGTGCGACAACTACAAAACATCATTCGCAACATTGTTGTTTTGAATA
ACGAAGAGCAAGTTTCCCTATCCCACTTACCTTCACAGTTAACCGCTAAAAAGAGAGCTCAAACAGACACAACAAGCGCT
AATTTGGGTCGCGATTCAGTAAACCATGTACAGCAGGTCACACCGAGTTCCGACCTAGAAAACATCGAAACACGCCCATC
TTATATCGATGAACCTATCGCGCGTACTCACTCAAACAGTACCCCATATTTTAATGACGATGGCAGCATTCGCCCAATGT
GGGAAGTCGAGCGAGAAGCGATTCAAAACGCCATTAACTTCTGTGATGGCAATGTTCTCAATGCCGCTGTAATGCTGGAG
CTAAGTCCATCAACGGTATACCGCAAGAAACAAGCGTGGGAAGCAGATGAGGCTAAAATTGAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(453-489)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A510I4T9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.385

97.405

0.481

Multiple sequence alignment