Detailed information NTG0741193

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDX83_RS05225
• Genome accession: NZ_CP122600
• Coordinates: 1098080..1099072 (+)
• Length: 330 a.a.
• NCBI ID: WP_063086191.1
• Uniprot ID: -
• Organism: Escherichia coli strain ETEC6333
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1093080..1104072

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDX83_RS05195 (QDX83_05195)	ispD	1093141..1093851 (+)	711	WP_063086188.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDX83_RS05200 (QDX83_05200)	ispF	1093851..1094330 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDX83_RS05205 (QDX83_05205)	truD	1094327..1095376 (+)	1050	WP_063086189.1	tRNA pseudouridine(13) synthase TruD	-
QDX83_RS05210 (QDX83_05210)	surE	1095357..1096118 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QDX83_RS05215 (QDX83_05215)	pcm	1096112..1096738 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDX83_RS05220 (QDX83_05220)	nlpD	1096923..1098017 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QDX83_RS05225 (QDX83_05225)	rpoS	1098080..1099072 (+)	993	WP_063086191.1	RNA polymerase sigma factor RpoS	Regulator
QDX83_RS05230 (QDX83_05230)	-	1099192..1099599 (-)	408	WP_001208077.1	MarR family transcriptional regulator	-
QDX83_RS05235 (QDX83_05235)	-	1099746..1100339 (+)	594	WP_000767723.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QDX83_RS05240 (QDX83_05240)	-	1100339..1101766 (+)	1428	WP_021513182.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QDX83_RS05245 (QDX83_05245)	-	1101777..1102013 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QDX83_RS05250 (QDX83_05250)	pphB	1102054..1102710 (-)	657	WP_001590575.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38000.90 Da
• Isoelectric Point: 4.5597

>NTDB_id=741193 QDX83_RS05225 WP_063086191.1 1098080..1099072(+) (rpoS) [Escherichia coli strain ETEC6333]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILVD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=741193 QDX83_RS05225 WP_063086191.1 1098080..1099072(+) (rpoS) [Escherichia coli strain ETEC6333]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGTCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715