Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   OIO78_RS17550 Genome accession   NZ_CP107597
Coordinates   3653990..3654316 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 1326581-2     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3648990..3659316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO78_RS17530 (OIO78_17535) - 3649090..3649719 (-) 630 WP_000219974.1 FHA domain-containing protein -
  OIO78_RS17535 (OIO78_17540) gspD 3649760..3652036 (-) 2277 WP_031959801.1 type II secretion system secretin GspD -
  OIO78_RS17540 (OIO78_17545) - 3652078..3652914 (-) 837 WP_000870031.1 type II secretion system protein N -
  OIO78_RS17545 (OIO78_17550) gspN 3652914..3653657 (-) 744 WP_000730343.1 type II secretion system protein N -
  OIO78_RS17550 (OIO78_17555) hns 3653990..3654316 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  OIO78_RS17555 (OIO78_17560) - 3654511..3654951 (-) 441 WP_000661569.1 thioesterase family protein -
  OIO78_RS17560 (OIO78_17565) - 3654959..3656152 (-) 1194 WP_000681780.1 membrane protein -
  OIO78_RS17565 (OIO78_17570) - 3656162..3657001 (-) 840 WP_001230201.1 hypothetical protein -
  OIO78_RS17570 (OIO78_17575) - 3657010..3657777 (-) 768 WP_031959800.1 uroporphyrinogen-III synthase -
  OIO78_RS17575 (OIO78_17580) hemC 3657782..3658699 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=741191 OIO78_RS17550 WP_000801427.1 3653990..3654316(-) (hns) [Acinetobacter baumannii strain 1326581-2]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=741191 OIO78_RS17550 WP_000801427.1 3653990..3654316(-) (hns) [Acinetobacter baumannii strain 1326581-2]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1