Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QDY30_RS15075 Genome accession   NZ_CP122588
Coordinates   3077847..3078476 (-) Length   209 a.a.
NCBI ID   WP_001612760.1    Uniprot ID   -
Organism   Escherichia coli strain ETEC6335     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3072847..3083476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY30_RS15060 (QDY30_15065) helD 3073089..3075143 (-) 2055 WP_086217534.1 DNA helicase IV -
  QDY30_RS15065 (QDY30_15070) yccF 3075266..3075712 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QDY30_RS15070 (QDY30_15075) yccS 3075722..3077884 (+) 2163 WP_000323868.1 YccS family putative transporter -
  QDY30_RS15075 (QDY30_15080) sxy/tfoX 3077847..3078476 (-) 630 WP_001612760.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QDY30_RS15080 (QDY30_15085) sulA 3078695..3079204 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  QDY30_RS15085 (QDY30_15090) ompA 3079561..3080601 (+) 1041 WP_023307840.1 porin OmpA -
  QDY30_RS15090 (QDY30_15095) matP 3080677..3081129 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  QDY30_RS15095 (QDY30_15100) ycbZ 3081315..3083075 (+) 1761 WP_062883666.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=741137 QDY30_RS15075 WP_001612760.1 3077847..3078476(-) (sxy/tfoX) [Escherichia coli strain ETEC6335]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSNGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=741137 QDY30_RS15075 WP_001612760.1 3077847..3078476(-) (sxy/tfoX) [Escherichia coli strain ETEC6335]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTATTTGCGATGGTTTCTAATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995