Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   OIO74_RS16895 Genome accession   NZ_CP107593
Coordinates   3563601..3563927 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 1326580     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3564144..3566252 3563601..3563927 flank 217


Gene organization within MGE regions


Location: 3563601..3566252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO74_RS16895 (OIO74_16895) hns 3563601..3563927 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  OIO74_RS16900 (OIO74_16900) - 3564144..3564966 (+) 823 WP_076611894.1 IS5-like element ISAba27 family transposase -
  OIO74_RS16905 (OIO74_16905) - 3565008..3565172 (-) 165 Protein_3299 acyl-CoA thioesterase -
  OIO74_RS16910 (OIO74_16910) - 3565284..3566252 (+) 969 WP_005804963.1 IS30 family transposase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=741113 OIO74_RS16895 WP_000801427.1 3563601..3563927(-) (hns) [Acinetobacter baumannii strain 1326580]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=741113 OIO74_RS16895 WP_000801427.1 3563601..3563927(-) (hns) [Acinetobacter baumannii strain 1326580]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1